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URC17213.1

Arc-Vir

ON548428__URC17213.1__X__00036

Identity

Accession:
ON548428 ↗
Protein ID:
URC17213.1 ↗
Kingdom:
archaea

Quality

85.3 mean pLDDT

Taxonomy

Lokiarchaeota_virus_Fenrir_Meg22_1214

TaxID: 2946035

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-73
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.80 56.0 4.68e-01 72.6% 83.0%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.72 50.0 3.76e-01 72.6% 44.4%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 52.0 3.37e-01 79.0% 18.2%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 54.0 3.39e-01 82.3% 42.7%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.65 51.0 4.46e-01 98.4% 55.8%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 41.0 2.59e-01 77.4% 33.0%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 40.0 3.95e-01 96.8% 82.1%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 36.0 2.98e-01 80.6% 69.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4339297 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 57.0 3.92e-01 71.0% 25.6%
3222769 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.75 63.0 3.86e-01 91.9% 16.5%
3289153 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 58.0 3.69e-01 100.0% 36.1%
3518500 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.63 47.0 3.65e-01 79.0% 67.7%
3620454 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 52.0 3.88e-01 90.3% 82.7%
3239642 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.61 48.0 3.19e-01 91.9% 62.6%
4525857 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.59 53.0 3.60e-01 100.0% 57.4%
3268169 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.56 51.0 4.31e-01 100.0% 67.0%
3706808 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 40.0 3.64e-01 82.3% 96.8%
4271175 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.52 42.0 3.28e-01 88.7% 48.1%
3513428 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 43.0 2.73e-01 95.2% 60.0%
D2 medium residues 83-143
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khvA05 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.58 42.0 3.71e-01 80.3% 79.4%
1mv8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 40.0 2.91e-01 77.0% 85.6%
2o1mA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 3.50e-01 85.2% 44.6%
1wgxA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 43.0 4.18e-01 96.7% 90.4%
2k6xA00 1.10.220.120 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Sigma-70 factor, region 1.1 0.52 41.0 3.91e-01 86.9% 80.6%
5ywwA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.51 38.0 3.16e-01 80.3% 55.7%
3vaxA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 38.0 2.58e-01 85.2% 19.4%
1r57A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 3.40e-01 88.5% 78.4%
3imkA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 3.15e-01 95.1% 52.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606521 109.4.1.394 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMC1_C 0.61 46.0 2.96e-01 83.6% 16.4%
5055214 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.28e-01 98.4% 72.5%
5008638 301.1.1.5 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › SpoU_sub_bind 0.54 37.0 3.76e-01 77.0% 73.3%
2485 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.53 43.0 4.18e-01 96.7% 90.4%
4949739 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.53 40.0 4.10e-01 85.2% 91.7%
4933352 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 41.0 4.27e-01 90.2% 98.2%
1523504 7523.1.1.16 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP 0.52 38.0 3.13e-01 82.0% 95.0%
5041104 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.50 41.0 3.67e-01 95.1% 64.2%
5068529 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.50 38.0 3.03e-01 83.6% 42.4%