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URC17264.1

Arc-Vir

ON548428__URC17264.1__X__00087

Identity

Accession:
ON548428 ↗
Protein ID:
URC17264.1 ↗
Kingdom:
archaea

Quality

83.0 mean pLDDT

Taxonomy

Lokiarchaeota_virus_Fenrir_Meg22_1214

TaxID: 2946035

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-57
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 47.0 3.41e-01 96.0% 25.6%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.66 37.0 3.03e-01 100.0% 31.8%
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 45.0 2.76e-01 76.0% 89.9%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.63 49.0 4.16e-01 100.0% 51.2%
5c40B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 43.0 2.67e-01 76.0% 91.3%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 50.0 4.03e-01 100.0% 45.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.61 49.0 3.65e-01 100.0% 32.9%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 43.0 2.89e-01 76.0% 58.7%
4zrmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 34.0 2.28e-01 100.0% 14.4%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 49.0 3.99e-01 94.0% 61.5%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 44.0 3.72e-01 86.0% 95.0%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 45.0 3.30e-01 100.0% 73.1%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.42e-01 86.0% 53.9%
1evjC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 40.0 2.73e-01 80.0% 60.2%
3f9uA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 47.0 3.45e-01 100.0% 71.7%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.54 41.0 3.36e-01 86.0% 43.3%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.54 38.0 3.72e-01 88.0% 63.6%
3n71A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 36.0 3.02e-01 70.0% 37.6%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 44.0 2.66e-01 92.0% 89.2%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 42.0 2.93e-01 100.0% 30.3%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 2.81e-01 88.0% 30.0%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 2.64e-01 80.0% 69.4%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.52 41.0 3.71e-01 88.0% 77.8%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.51 43.0 3.66e-01 100.0% 84.3%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 37.0 3.43e-01 88.0% 88.3%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.51 44.0 3.50e-01 100.0% 50.0%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 41.0 3.26e-01 94.0% 49.1%
2cpiA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 34.0 2.99e-01 72.0% 51.9%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.50 39.0 3.78e-01 100.0% 78.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3651912 2487.1.1.1 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.87 39.0 2.64e-01 78.0% 13.3%
3915698 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 47.0 3.93e-01 80.0% 80.0%
3350168 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 52.0 4.04e-01 100.0% 45.8%
3517405 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 4.31e-01 86.0% 67.1%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.61 47.0 4.08e-01 88.0% 53.8%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.21e-01 92.0% 54.1%
3738488 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 41.0 3.36e-01 70.0% 37.9%
3681482 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.60 50.0 3.29e-01 98.0% 44.3%
5052804 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.59 40.0 2.64e-01 72.0% 30.7%
4022099 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 50.0 3.66e-01 100.0% 36.4%
3691461 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.57 47.0 3.08e-01 100.0% 20.8%
3958814 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 43.0 3.73e-01 84.0% 57.5%
4518214 223.1.1.17 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs 0.57 42.0 3.47e-01 84.0% 46.0%
3233321 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.56 42.0 2.66e-01 84.0% 15.2%
5053631 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.56 48.0 3.67e-01 94.0% 44.5%
3939681 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 46.0 2.84e-01 94.0% 87.9%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.56 41.0 3.64e-01 88.0% 52.5%
3264554 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 47.0 2.88e-01 100.0% 14.6%
4240651 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.54 38.0 3.14e-01 76.0% 46.0%
3614586 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.54 42.0 3.29e-01 92.0% 37.3%
3431681 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 40.0 3.60e-01 86.0% 94.9%
5066196 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.54 42.0 3.40e-01 88.0% 59.2%
3665093 109.4.1.338 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.54 43.0 2.56e-01 90.0% 19.5%
3829353 101.1.2.641 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.53 44.0 2.59e-01 98.0% 21.4%
5054476 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.52 39.0 3.29e-01 88.0% 60.0%
3255548 327.11.2.24 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_12 0.52 38.0 3.26e-01 78.0% 98.8%
3522596 371.1.1.2 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_2 0.52 35.0 2.35e-01 74.0% 25.5%
3685188 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.51 45.0 3.09e-01 100.0% 59.8%
3637481 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 42.0 2.76e-01 96.0% 35.5%
3487996 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.51 37.0 3.59e-01 84.0% 69.5%
3229165 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.50 37.0 3.19e-01 84.0% 52.3%
4942060 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.50 38.0 3.15e-01 88.0% 91.0%