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URC17353.1

Arc-Vir

ON548429__URC17353.1__X__00049

Identity

Accession:
ON548429 ↗
Protein ID:
URC17353.1 ↗
Kingdom:
archaea

Quality

59.7 mean pLDDT

Taxonomy

Helarchaeota_virus_Nidhogg_Meg22_1214

TaxID: 2946033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-91
PDB
D2 medium residues 94-136
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.72 61.0 4.31e-01 100.0% 43.7%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.71 61.0 4.26e-01 100.0% 76.9%
5muaB01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.70 58.0 4.19e-01 100.0% 48.2%
5d61A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.69 57.0 3.99e-01 100.0% 42.2%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 57.0 4.04e-01 100.0% 41.4%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 54.0 4.00e-01 97.7% 41.8%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 47.0 4.63e-01 88.4% 76.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.43e-01 100.0% 28.2%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.63 46.0 3.51e-01 95.3% 32.1%
3cngA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 43.0 4.58e-01 81.4% 94.1%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.62 48.0 3.45e-01 100.0% 28.3%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 45.0 4.64e-01 95.3% 97.4%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.61 51.0 3.21e-01 100.0% 17.6%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 53.0 4.80e-01 100.0% 93.1%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 39.0 2.95e-01 95.3% 25.5%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 3.55e-01 95.3% 45.2%
1lmlA04 2.30.34.10 Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 0.59 48.0 3.83e-01 100.0% 50.5%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.13e-01 100.0% 70.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.51e-01 100.0% 79.7%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 44.0 3.68e-01 93.0% 59.1%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.58 47.0 3.76e-01 100.0% 46.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.57 41.0 3.93e-01 86.0% 89.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.38e-01 100.0% 82.8%
1vzrA01 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.56 37.0 2.85e-01 88.4% 25.7%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.13e-01 100.0% 93.0%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.17e-01 100.0% 82.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.66e-01 100.0% 55.9%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 3.62e-01 100.0% 46.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.00e-01 100.0% 75.0%
6p0cA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 2.94e-01 88.4% 83.7%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.54 43.0 2.96e-01 100.0% 24.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.28e-01 100.0% 38.0%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 2.93e-01 90.7% 33.6%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.53 41.0 3.58e-01 95.3% 63.6%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.53 44.0 2.46e-01 100.0% 6.3%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.52e-01 100.0% 52.5%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 3.92e-01 100.0% 74.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.59e-01 93.0% 69.2%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 2.82e-01 86.0% 29.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 42.0 3.81e-01 100.0% 70.8%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 3.75e-01 100.0% 83.6%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 34.0 3.53e-01 90.7% 76.9%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 39.0 3.78e-01 100.0% 84.5%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 3.87e-01 100.0% 76.7%
2k89A00 3.10.20.870 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain 0.51 38.0 3.34e-01 93.0% 53.8%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.65e-01 90.7% 85.7%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.50 33.0 3.36e-01 88.4% 63.0%
3oa5A01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 38.0 2.82e-01 90.7% 29.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 3.54e-01 100.0% 60.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3995563 375.1.1.89 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.81 66.0 6.32e-01 93.0% 78.0%
3237336 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 64.0 6.16e-01 95.3% 78.0%
5031658 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 64.0 6.16e-01 100.0% 94.0%
4972400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 55.0 5.47e-01 93.0% 84.4%
3398775 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.71 54.0 5.59e-01 88.4% 95.0%
3942967 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.70 55.0 4.58e-01 100.0% 48.8%
4971344 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 53.0 5.11e-01 86.0% 90.0%
None — 0.69 48.0 2.94e-01 93.0% 10.8%
4962743 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 52.0 5.21e-01 86.0% 82.2%
2123 6.1.1.19 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.69 57.0 4.10e-01 100.0% 43.5%
3593875 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 48.0 4.52e-01 88.4% 63.6%
3925197 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.66 54.0 3.39e-01 95.3% 43.2%
3580045 375.1.1.217 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26040 0.66 46.0 4.76e-01 90.7% 91.4%
3702861 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.66 47.0 4.50e-01 88.4% 63.6%
4960549 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.50e-01 88.4% 68.0%
3247046 377.1.1.83 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.65 46.0 4.66e-01 93.0% 85.0%
3500033 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 47.0 4.55e-01 88.4% 70.0%
3189994 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.65 46.0 3.82e-01 88.4% 38.9%
4962895 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 50.0 4.76e-01 95.3% 83.6%
3505640 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.64 46.0 4.26e-01 88.4% 58.3%
4028185 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.64 46.0 4.48e-01 88.4% 70.0%
4963287 375.1.1.334 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 0.64 45.0 4.28e-01 90.7% 61.8%
3396514 386.1.1.259 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.64 42.0 4.24e-01 97.7% 66.7%
5034888 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.64 50.0 3.89e-01 100.0% 39.0%
3308072 375.1.1.53 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.64 46.0 4.70e-01 86.0% 85.0%
5039125 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.63 51.0 4.62e-01 100.0% 67.7%
5032759 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.61 46.0 3.87e-01 100.0% 45.2%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.61 46.0 4.19e-01 100.0% 60.0%
3701496 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 46.0 4.60e-01 100.0% 93.3%
3491043 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.59 46.0 3.67e-01 97.7% 52.4%
3807783 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.59 44.0 4.47e-01 93.0% 90.0%
3936474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 3.59e-01 100.0% 41.1%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 44.0 3.60e-01 100.0% 42.2%
3953196 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 41.0 3.30e-01 93.0% 35.8%
3268906 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.58 48.0 3.94e-01 100.0% 71.9%
222713 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.58 37.0 3.71e-01 88.4% 57.8%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.13e-01 100.0% 69.1%
4030046 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 45.0 4.07e-01 97.7% 61.5%
135550 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.58 47.0 3.76e-01 100.0% 46.9%
5078768 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.58 44.0 3.10e-01 90.7% 88.1%
5014374 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.57 43.0 2.47e-01 95.3% 7.7%
4203984 101.8.1.1 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.57 43.0 2.47e-01 95.3% 7.7%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 3.91e-01 88.4% 75.7%
3617355 4.1.1.348 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.57 43.0 3.53e-01 100.0% 41.1%
3253246 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 36.0 3.73e-01 93.0% 86.7%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.12e-01 95.3% 76.7%
3980349 375.1.1.140 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FdhE_central 0.56 41.0 3.98e-01 83.7% 72.0%
3935170 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 40.0 4.03e-01 88.4% 75.6%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 39.0 3.78e-01 88.4% 61.8%
3587295 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 43.0 3.98e-01 97.7% 80.0%
3937266 4.1.1.414 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_LplA_LipB 0.55 44.0 2.72e-01 100.0% 13.8%
3924523 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.55 42.0 2.89e-01 100.0% 22.4%
5041606 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 41.0 3.72e-01 86.0% 58.5%
3929758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 3.96e-01 100.0% 74.5%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 41.0 3.70e-01 100.0% 55.7%
3383223 375.1.1.53 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.54 38.0 3.66e-01 88.4% 60.0%
3945357 375.1.1.234 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_PaaD 0.54 41.0 4.15e-01 90.7% 100.0%
4949189 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.54 40.0 3.63e-01 90.7% 73.9%
4139105 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.54 42.0 2.92e-01 95.3% 31.8%
3702274 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.54 43.0 4.01e-01 100.0% 70.0%
3639760 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.54 43.0 2.93e-01 100.0% 22.8%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.54 41.0 3.70e-01 100.0% 57.3%
153248 219.1.1.40 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like 0.54 39.0 2.54e-01 83.7% 83.1%
3638396 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.53 43.0 3.99e-01 100.0% 76.7%
3680162 375.1.1.148 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C 0.52 37.0 3.78e-01 79.1% 100.0%