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URC17410.1

Arc-Vir

ON548429__URC17410.1__X__00106

Identity

Accession:
ON548429 ↗
Protein ID:
URC17410.1 ↗
Kingdom:
archaea

Quality

74.6 mean pLDDT

Taxonomy

Helarchaeota_virus_Nidhogg_Meg22_1214

TaxID: 2946033

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-126
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xuxB01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.63 52.0 3.80e-01 88.0% 33.5%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.62 49.0 4.05e-01 85.9% 70.1%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.61 36.0 3.91e-01 76.1% 71.1%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 50.0 4.33e-01 93.5% 80.5%
1f5qB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 35.0 3.35e-01 91.3% 50.5%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 35.0 3.67e-01 93.5% 67.9%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.56 35.0 3.97e-01 80.4% 85.1%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 42.0 3.05e-01 79.3% 76.7%
1r2jA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 40.0 3.41e-01 73.9% 47.9%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.55 42.0 3.82e-01 88.0% 58.9%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.55 39.0 3.59e-01 75.0% 84.1%
4ai4A00 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.55 43.0 3.53e-01 87.0% 69.9%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.55 38.0 3.63e-01 71.7% 86.8%
1q16C01 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.54 41.0 3.19e-01 81.5% 44.9%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.59e-01 79.3% 78.8%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 39.0 3.24e-01 76.1% 43.1%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 37.0 3.30e-01 97.8% 48.5%
2kq9A00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.53 40.0 3.73e-01 78.3% 81.2%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 33.0 2.85e-01 90.2% 39.9%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 36.0 3.54e-01 83.7% 66.7%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 3.64e-01 89.1% 83.2%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.52 41.0 3.45e-01 83.7% 67.3%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.52 30.0 3.67e-01 80.4% 92.9%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 32.0 3.41e-01 90.2% 68.3%
3n98A02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.52 44.0 3.87e-01 92.4% 80.6%
1pjqA03 1.10.8.210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Sirohaem synthase, dimerisation domain 0.51 32.0 3.60e-01 82.6% 89.2%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.91e-01 100.0% 78.3%
3jrtA00 1.20.120.1060 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 43.0 3.64e-01 97.8% 82.5%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 35.0 3.45e-01 72.8% 86.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4989005 5053.1.1.1 ↗ alpha complex topology › Clc chloride channel › Clc chloride channel › Clc chloride channel › Voltage_CLC 0.63 45.0 2.88e-01 73.9% 84.2%
5012706 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 43.0 4.04e-01 71.7% 81.7%
4944437 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.59 44.0 4.08e-01 78.3% 70.4%
4424336 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.58 44.0 3.32e-01 79.3% 69.5%
3596209 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.58 42.0 3.43e-01 75.0% 51.5%
3396919 3069.1.1.2 ↗ alpha arrays › BART › BART › BART › P_C10 0.58 45.0 4.39e-01 100.0% 78.0%
3248081 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.57 49.0 4.49e-01 94.6% 89.2%
3788981 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 32.0 3.69e-01 97.8% 78.5%
4515415 3069.1.1.2 ↗ alpha arrays › BART › BART › BART › P_C10 0.56 43.0 4.34e-01 100.0% 82.1%
5029231 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 43.0 2.77e-01 85.9% 35.6%
4013341 3755.4.1.3 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N 0.56 41.0 3.69e-01 77.2% 96.0%
5068814 4156.1.1.6 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.55 47.0 4.32e-01 95.7% 98.4%
4095698 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.55 39.0 3.62e-01 73.9% 90.4%
4488596 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.54 39.0 3.64e-01 76.1% 77.4%
4274219 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.54 38.0 3.55e-01 75.0% 71.7%
3941235 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.53 37.0 3.66e-01 70.7% 78.9%
3513473 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 40.0 3.49e-01 83.7% 77.3%
3603633 3997.1.1.1 ↗ alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.52 39.0 3.16e-01 83.7% 39.5%
4960785 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.52 32.0 3.58e-01 80.4% 81.4%
3180461 193.1.1.12 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › HAUS6_N 0.52 45.0 3.82e-01 98.9% 75.0%
3593017 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 39.0 3.02e-01 80.4% 79.5%
3664817 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.51 38.0 3.97e-01 79.3% 97.5%
383331 101.31.1.1 ↗ alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit › Sf6_terminase 0.51 36.0 3.21e-01 72.8% 68.5%
3923539 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 42.0 3.58e-01 89.1% 79.3%
4027511 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 37.0 3.08e-01 78.3% 75.2%
2754206 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.50 39.0 3.78e-01 82.6% 94.2%