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URC17446.1

Arc-Vir

ON548429__URC17446.1__X__00142

Identity

Accession:
ON548429 ↗
Protein ID:
URC17446.1 ↗
Kingdom:
archaea

Quality

56.2 mean pLDDT

Taxonomy

Helarchaeota_virus_Nidhogg_Meg22_1214

TaxID: 2946033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 126-310
PDB
Domain cluster: rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00370__D51-199
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.80 61.0 6.92e-01 83.8% 100.0%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.76 59.0 6.59e-01 86.5% 100.0%
4owpB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.75 62.0 6.61e-01 90.8% 95.8%
4f7oA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.73 64.0 5.87e-01 94.1% 72.8%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 58.0 5.94e-01 91.4% 93.3%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 58.0 5.96e-01 91.9% 94.9%
2og4A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 63.0 5.72e-01 100.0% 85.9%
2znrA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 57.0 5.83e-01 98.4% 94.9%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 29.0 3.83e-01 73.0% 90.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 18.0 2.84e-01 87.6% 71.8%
3dlaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.54 44.0 3.62e-01 85.4% 79.5%
3g98A00 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 29.0 3.63e-01 77.3% 89.2%
3k93A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.52 36.0 3.42e-01 70.8% 63.2%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 32.0 3.60e-01 83.8% 80.6%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.51 34.0 3.83e-01 75.7% 87.9%
5ysnB02 3.40.50.11240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ethanolamine ammonia-lyase light chain (EutC) 0.50 39.0 3.97e-01 81.1% 86.5%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.50 28.0 3.19e-01 70.8% 72.5%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952815 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.88 58.0 6.80e-01 87.0% 91.9%
4993841 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.85 61.0 7.12e-01 85.4% 100.0%
4996288 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.83 59.0 6.87e-01 85.4% 99.3%
4207776 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.81 62.0 6.91e-01 89.2% 98.0%
3590544 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.80 61.0 6.84e-01 85.4% 97.3%
5068304 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.79 60.0 6.65e-01 87.0% 95.3%
3484111 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.78 69.0 6.86e-01 100.0% 90.0%
5081359 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.77 60.0 6.27e-01 87.6% 86.5%
5049198 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.77 63.0 6.68e-01 87.6% 95.7%
3799804 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.76 67.0 6.56e-01 100.0% 86.4%
4486867 3351.1.1.0 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.76 40.0 5.33e-01 80.0% 94.0%
4946921 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.76 66.0 6.77e-01 96.2% 95.4%
3509176 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.75 63.0 6.33e-01 87.0% 97.8%
5053690 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.75 60.0 6.56e-01 87.0% 99.4%
3264848 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.75 62.0 6.48e-01 86.5% 97.6%
4978781 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.74 62.0 6.61e-01 86.5% 98.8%
2511871 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.74 63.0 6.42e-01 87.6% 91.6%
5053264 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.73 64.0 6.64e-01 100.0% 97.1%
3679339 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.73 61.0 6.50e-01 87.6% 97.6%
4977855 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.73 69.0 6.49e-01 100.0% 88.6%
3438031 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.73 68.0 6.55e-01 100.0% 91.4%
3272897 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.73 61.0 5.91e-01 87.0% 90.7%
1687168 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.73 61.0 6.16e-01 87.6% 87.5%
4646372 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.73 65.0 6.04e-01 96.2% 76.9%
3732315 2492.1.1.10 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.73 62.0 5.49e-01 88.1% 96.8%
3240882 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.73 64.0 5.69e-01 92.4% 99.2%
4039199 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.72 67.0 5.94e-01 100.0% 72.0%
3668779 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.72 61.0 6.06e-01 87.6% 89.5%
5041727 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.72 58.0 6.27e-01 84.3% 97.5%
3378032 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.71 63.0 6.20e-01 93.0% 97.9%
3713172 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.71 61.0 5.97e-01 89.7% 89.7%
3719681 1008.1.1.99 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › JAB 0.71 67.0 5.92e-01 100.0% 74.5%
3635387 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.71 63.0 5.77e-01 92.4% 99.6%
2491443 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.71 63.0 5.66e-01 92.4% 99.6%
3263073 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.70 66.0 5.87e-01 99.5% 74.4%
3612039 2492.1.1.13 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PROCT 0.70 66.0 5.64e-01 100.0% 75.3%
3784974 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.68 59.0 5.69e-01 91.4% 88.1%
4018533 2492.1.1.3 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB,PROCT 0.68 65.0 5.57e-01 100.0% 77.5%
4438753 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 64.0 5.59e-01 100.0% 92.6%
3594802 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 59.0 6.01e-01 91.4% 95.6%
3484179 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.68 65.0 5.75e-01 100.0% 82.4%
4887266 2492.1.1.42 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.68 57.0 6.03e-01 91.4% 98.2%
4137739 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.68 58.0 5.75e-01 91.4% 85.6%
5000479 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.67 64.0 5.95e-01 100.0% 99.1%
4221257 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.67 59.0 5.92e-01 90.8% 96.8%
3240522 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.67 59.0 5.72e-01 91.4% 93.0%
4158399 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.67 58.0 5.80e-01 91.4% 89.5%
3663319 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.67 59.0 5.80e-01 92.4% 95.4%
3167133 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.67 58.0 5.81e-01 91.4% 90.8%
4681448 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.67 58.0 5.54e-01 91.9% 93.4%
3505477 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.66 57.0 5.60e-01 91.9% 89.5%
3449835 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.64 56.0 5.79e-01 96.8% 98.3%
5072012 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.61 31.0 4.21e-01 73.0% 97.8%
3895228 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.56 35.0 3.72e-01 78.9% 69.1%
4990951 3535.1.1.0 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.55 39.0 4.50e-01 83.2% 100.0%
5038844 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 21.0 3.06e-01 85.4% 77.5%
3412401 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.54 43.0 4.50e-01 83.2% 94.1%
3281018 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 24.0 3.16e-01 83.8% 75.0%
3736295 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.53 42.0 4.14e-01 84.3% 95.6%
3170444 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.52 42.0 4.12e-01 84.9% 95.0%
3288021 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.52 42.0 4.26e-01 84.3% 95.0%
3514202 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.52 42.0 4.00e-01 84.9% 92.6%
3902426 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.52 41.0 3.97e-01 84.3% 95.3%
4058117 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.51 32.0 3.68e-01 81.6% 82.1%
4228954 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 33.0 3.79e-01 74.6% 88.9%
3248460 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 40.0 3.13e-01 81.6% 98.4%
3455988 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.98e-01 87.0% 93.1%
5040123 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.50 23.0 3.14e-01 80.0% 81.0%
D2 high residues 330-380
PDB
D3 medium residues 1-61
PDB
D4 medium residues 62-122
PDB