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URC17460.1

Arc-Vir

ON548429__URC17460.1__X__00156

Identity

Accession:
ON548429 ↗
Protein ID:
URC17460.1 ↗
Kingdom:
archaea

Quality

74.9 mean pLDDT

Taxonomy

Helarchaeota_virus_Nidhogg_Meg22_1214

TaxID: 2946033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5um2A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.76 54.0 3.75e-01 74.5% 65.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.23e-01 83.6% 47.6%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.83e-01 85.5% 72.7%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.28e-01 90.9% 58.4%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 56.0 4.19e-01 100.0% 58.2%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.60 53.0 4.97e-01 100.0% 82.4%
2in3A02 1.10.472.60 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › putative protein disulfide isomerase domain 0.59 48.0 3.88e-01 98.2% 61.0%
3d59A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 45.0 2.81e-01 100.0% 26.9%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 45.0 3.18e-01 100.0% 50.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704050 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 55.0 5.71e-01 70.9% 86.0%
3930423 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.93e-01 89.1% 85.0%
4945040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 54.0 5.30e-01 78.2% 75.0%
3940696 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.73 57.0 5.94e-01 83.6% 98.0%
3992048 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 56.0 5.64e-01 81.8% 89.1%
3925766 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.72 59.0 5.32e-01 89.1% 72.0%
4928271 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 49.0 5.52e-01 70.9% 97.5%
3925094 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.64e-01 85.5% 98.2%
3593914 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 4.22e-01 81.8% 63.5%
3934128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 5.12e-01 76.4% 78.2%
4944585 101.1.2.872 ↗ alpha arrays › HTH › HTH › winged helix domain › rve 0.71 55.0 5.35e-01 83.6% 76.7%
3520185 101.1.2.518 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DNAJC9 0.70 55.0 4.91e-01 83.6% 62.7%
3403406 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.70 55.0 5.77e-01 87.3% 100.0%
3781056 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.66 56.0 4.19e-01 100.0% 44.8%
3422502 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 50.0 4.05e-01 83.6% 49.5%
3946360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 5.17e-01 94.5% 80.0%
3338910 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 55.0 5.15e-01 100.0% 84.3%
3784421 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 4.77e-01 100.0% 91.8%
3547439 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.60 50.0 3.30e-01 100.0% 31.7%
5042704 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.63e-01 96.4% 89.2%
3610491 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 3.16e-01 100.0% 38.8%
3594598 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.27e-01 100.0% 56.1%
4940510 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 46.0 3.50e-01 98.2% 84.8%