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URC17482.1

Arc-Vir

ON548430__URC17482.1__X__00001

Identity

Accession:
ON548430 ↗
Protein ID:
URC17482.1 ↗
Kingdom:
archaea

Quality

80.7 mean pLDDT

Taxonomy

Lokiarchaeota_virus_Skoll_Meg22_1214

TaxID: 2946037

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-65
PDB
Domain cluster: rep: ON548427__URC17087.1__X__00012__D9-60
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kskA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.82 56.0 5.65e-01 70.8% 80.3%
3kbgA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.82 56.0 5.18e-01 70.8% 67.9%
1zud400 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.82 63.0 6.33e-01 81.5% 84.8%
3cwiA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.80 61.0 6.05e-01 81.5% 88.2%
1ryjA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.75 58.0 5.68e-01 90.8% 78.6%
2istA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.73 60.0 5.85e-01 90.8% 91.7%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.73 52.0 5.66e-01 84.6% 96.1%
2q5wD00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.72 61.0 5.74e-01 92.3% 83.1%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 56.0 5.15e-01 90.8% 77.9%
3rpfC00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.68 56.0 5.46e-01 90.8% 87.5%
4xttA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.66 52.0 4.81e-01 87.7% 71.8%
4gx0B03 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.66 52.0 4.95e-01 87.7% 76.9%
1h3eA03 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.65 49.0 4.69e-01 83.1% 93.4%
3hp7A01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.64 44.0 4.44e-01 72.3% 87.7%
2lueA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 51.0 4.23e-01 90.8% 61.3%
4g65B02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.62 48.0 4.35e-01 86.2% 66.3%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 52.0 4.34e-01 100.0% 92.6%
6ea2A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.60 51.0 3.74e-01 96.9% 43.3%
1wckA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.98e-01 98.5% 88.2%
4jklA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 50.0 3.73e-01 100.0% 62.6%
7vqmA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 49.0 3.67e-01 100.0% 77.7%
2dyoA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 4.34e-01 92.3% 88.1%
1yewA01 2.60.120.570 Mainly Beta › Sandwich › Jelly Rolls › Particulate methane monooxygenase, b subunit. Chain: A, domain 1 0.57 49.0 3.86e-01 100.0% 64.4%
6vfrA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 40.0 3.55e-01 76.9% 82.9%
1wv3A02 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 47.0 4.00e-01 100.0% 55.0%
2dh2A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 46.0 4.22e-01 98.5% 97.8%
5nn3A05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 46.0 3.78e-01 100.0% 100.0%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 45.0 3.06e-01 100.0% 33.7%
3lvtA05 2.60.40.2220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.39e-01 100.0% 98.7%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.69e-01 87.7% 60.7%
1v7wA02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.52 47.0 4.30e-01 100.0% 94.0%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.94e-01 95.4% 72.8%
5oyjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.93e-01 96.9% 73.7%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.51 42.0 3.72e-01 100.0% 81.7%
1egiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 41.0 3.45e-01 98.5% 98.4%
4djmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.90e-01 93.8% 81.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049011 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.95 78.0 8.12e-01 89.2% 93.3%
5046577 221.1.2.21 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › ThiS 0.90 68.0 7.40e-01 86.2% 94.5%
3587128 221.1.2.8 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4_2 0.86 60.0 5.87e-01 72.3% 82.9%
4979288 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.86 70.0 6.89e-01 98.5% 81.4%
4031038 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.86 68.0 7.10e-01 84.6% 98.3%
4600619 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.84 67.0 6.72e-01 84.6% 93.8%
3838040 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.82 65.0 6.52e-01 84.6% 95.4%
3346507 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.82 66.0 6.13e-01 86.2% 83.7%
4586421 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.82 63.0 6.33e-01 81.5% 87.7%
4938902 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.81 64.0 6.65e-01 90.8% 91.7%
4992442 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.80 63.0 6.36e-01 90.8% 84.6%
3428241 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.80 60.0 5.73e-01 80.0% 86.7%
5024466 221.1.1.75 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 0.79 65.0 6.78e-01 96.9% 95.0%
3265322 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.79 63.0 6.02e-01 86.2% 100.0%
4932455 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.79 62.0 5.88e-01 83.1% 92.0%
3595231 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.79 62.0 6.08e-01 84.6% 95.7%
3446239 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.79 63.0 6.04e-01 90.8% 74.7%
4930835 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.78 62.0 6.44e-01 90.8% 91.7%
3953162 221.1.1.84 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-Mut7C 0.78 65.0 5.94e-01 100.0% 69.4%
4380588 221.1.4.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like 0.78 66.0 6.09e-01 90.8% 80.0%
4943878 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.77 67.0 6.40e-01 95.4% 90.7%
5050632 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.76 69.0 6.40e-01 98.5% 81.2%
168762 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.76 58.0 5.68e-01 81.5% 85.7%
4417270 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.75 62.0 5.20e-01 90.8% 55.5%
3952854 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.75 63.0 5.66e-01 92.3% 75.6%
3584824 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.75 60.0 6.25e-01 87.7% 98.3%
3977788 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.74 60.0 5.79e-01 89.2% 89.3%
4627512 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 56.0 5.80e-01 81.5% 90.0%
4997730 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.73 65.0 5.77e-01 96.9% 87.8%
4510393 221.1.1.21 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH 0.73 61.0 5.98e-01 92.3% 85.7%
5070573 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.72 64.0 5.82e-01 96.9% 92.9%
5060920 221.1.1.16 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TGS 0.71 52.0 5.43e-01 78.5% 93.3%
4958571 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 49.0 5.28e-01 75.4% 90.9%
143708 221.1.1.14 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.68 56.0 5.40e-01 90.8% 85.1%
4942897 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.67 54.0 5.00e-01 89.2% 72.9%
4443200 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 49.0 5.26e-01 78.5% 92.7%
3336901 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 53.0 4.95e-01 90.8% 81.2%
3781794 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 57.0 5.27e-01 96.9% 82.4%
4147794 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.66 52.0 4.84e-01 87.7% 71.8%
4102451 221.1.1.21 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH 0.64 55.0 5.29e-01 96.9% 84.0%
4654573 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.63 49.0 4.49e-01 87.7% 68.9%
5081528 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 54.0 4.87e-01 96.9% 75.6%
1277765 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.62 48.0 4.38e-01 87.7% 69.2%
4303954 2484.1.1.178 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA 0.61 48.0 3.02e-01 87.7% 18.2%
5050795 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.61 48.0 4.48e-01 89.2% 71.8%
3514075 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.60 45.0 4.42e-01 95.4% 75.7%
4103304 3325.1.1.1 ↗ a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.60 46.0 3.76e-01 84.6% 42.3%
3838712 2484.1.1.245 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA 0.60 48.0 2.97e-01 89.2% 16.4%
4160101 11.1.1.69 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Monooxygenase_B 0.60 48.0 3.92e-01 92.3% 55.6%
3272036 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.37e-01 100.0% 59.1%
4977569 3325.1.1.0 ↗ a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA 0.59 45.0 3.61e-01 86.2% 45.7%
3784836 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 45.0 4.01e-01 86.2% 56.0%
1159187 221.1.1.24 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblB 0.58 48.0 4.13e-01 92.3% 69.8%
1712534 7587.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.57 47.0 4.38e-01 100.0% 71.9%
4174890 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.57 48.0 3.95e-01 100.0% 52.2%
5054083 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 49.0 4.15e-01 100.0% 73.9%
2095620 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.57 47.0 3.90e-01 100.0% 100.0%
4023966 304.9.1.6 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.56 42.0 3.40e-01 84.6% 40.0%
5035931 3114.1.1.0 ↗ beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain 0.56 48.0 4.63e-01 96.9% 92.0%
4433089 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 39.0 3.46e-01 78.5% 91.4%
133971 10.3.1.7 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › BclA_C 0.53 41.0 3.31e-01 87.7% 97.8%
4941707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.83e-01 90.8% 76.8%
4871888 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.50 37.0 3.50e-01 86.2% 64.2%