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URC17485.1

Arc-Vir

ON548430__URC17485.1__X__00004

Identity

Accession:: ON548430 ↗
Protein ID:: URC17485.1 ↗
Kingdom:: archaea

Quality

88.2 mean pLDDT

Taxonomy

Lokiarchaeota_virus_Skoll_Meg22_1214

TaxID: 2946037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-244

PDB

Domain cluster: rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qwuA02	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.76	67.0	6.66e-01	100.0%	90.0%
3zoqC00	6.20.250.30	Special › Other non-globular › Double Stranded RNA Binding Domain ›	0.67	20.0	3.84e-01	94.9%	92.5%
6rarI01	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.65	60.0	5.85e-01	100.0%	95.4%
4glwA01	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.64	59.0	5.41e-01	97.7%	87.8%
3h20A01	3.30.1490.240	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain	0.60	22.0	3.52e-01	96.0%	87.9%
2lw3A00	2.60.40.2880	Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain	0.58	22.0	2.95e-01	100.0%	62.2%
3kyhC01	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.56	52.0	4.65e-01	100.0%	79.2%
4pz6A02	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.55	51.0	4.59e-01	100.0%	78.8%
6julA02	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.53	24.0	3.10e-01	96.0%	72.9%
1js8B02	2.60.310.10	Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain	0.51	25.0	3.24e-01	100.0%	80.0%
1jx4A04	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.50	23.0	2.99e-01	96.0%	74.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3273589	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.85	81.0	6.71e-01	100.0%	74.2%
1698226	206.1.3.23 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase	0.76	70.0	6.65e-01	100.0%	83.8%
3594967	206.1.3.70 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF7920	0.76	72.0	5.83e-01	100.0%	64.0%
3708389	206.1.3.24 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_lig_T4_1	0.76	72.0	5.62e-01	100.0%	56.9%
3594517	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.76	72.0	5.87e-01	100.0%	64.9%
4983231	206.1.3.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M	0.61	55.0	5.31e-01	100.0%	86.5%
3784943	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.56	51.0	3.98e-01	100.0%	48.6%
7119	206.1.3.4 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme	0.56	52.0	4.61e-01	100.0%	76.3%
None	—		0.54	50.0	3.92e-01	100.0%	49.7%
5041322	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.54	23.0	2.94e-01	100.0%	63.8%
3508990	3115.3.1.2 ↗	a+b two layers › GP2-like › P56 › P56 › DUF2922	0.53	22.0	3.34e-01	93.2%	98.4%

D2 medium residues 1-67

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1s4uX00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.61	47.0	2.97e-01	85.1%	28.1%
3flpA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.59	41.0	2.93e-01	74.6%	46.5%
4i8oA01	3.30.310.240	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain	0.59	43.0	3.99e-01	80.6%	62.9%
3lf7A01	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.56	46.0	2.96e-01	100.0%	55.2%
7c38B01	2.120.10.70	Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin	0.56	42.0	2.79e-01	85.1%	32.3%
3jamg01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.55	40.0	2.69e-01	80.6%	65.5%
7ne4A01	2.130.10.120	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain	0.55	43.0	2.79e-01	86.6%	28.6%
3v5nB02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.55	43.0	3.10e-01	82.1%	31.0%
6igbA00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.55	42.0	2.73e-01	88.1%	30.9%
3pcrA01	3.10.450.460	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain	0.55	39.0	3.61e-01	82.1%	56.4%
3jbtA05	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	41.0	2.64e-01	88.1%	26.4%
3bp1A02	3.30.1130.10	Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain	0.53	37.0	3.09e-01	77.6%	88.0%
6qp9B01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.52	42.0	2.61e-01	92.5%	54.2%
1oo0A00	3.30.1560.10	Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi	0.52	36.0	2.88e-01	74.6%	36.1%
2xepB01	3.10.450.280	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	38.0	3.29e-01	83.6%	86.0%

ECOD (27)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4955662	298.3.1.0 ↗	a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like	0.68	47.0	3.34e-01	73.1%	71.5%
3707052	5.1.5.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed	0.61	46.0	2.86e-01	85.1%	39.1%
3573649	5.1.4.12 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema	0.61	47.0	2.84e-01	86.6%	51.8%
4003315	5.1.5.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40	0.60	45.0	2.88e-01	83.6%	36.7%
4941310	3504.3.1.1 ↗	beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N	0.60	44.0	3.38e-01	79.1%	56.1%
3631256	5.1.4.169 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd	0.59	46.0	2.92e-01	88.1%	27.2%
5018171	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.59	42.0	4.13e-01	82.1%	69.3%
4572902	5.1.4.169 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd	0.59	45.0	2.77e-01	83.6%	50.2%
3585974	5.1.4.151 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40	0.59	45.0	2.69e-01	88.1%	27.7%
3565994	5.1.4.137 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nbas_N	0.59	47.0	2.87e-01	94.0%	36.0%
3492308	5.1.4.62 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN	0.57	42.0	2.64e-01	79.1%	49.7%
4575488	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.57	42.0	2.87e-01	77.6%	94.3%
3949933	5.1.4.14 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N	0.57	44.0	2.79e-01	85.1%	27.2%
4935086	3504.3.1.1 ↗	beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N	0.57	41.0	3.19e-01	77.6%	67.7%
4355548	558.1.1.26 ↗	alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40	0.57	42.0	2.64e-01	83.6%	20.2%
3713034	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.57	44.0	2.74e-01	85.1%	28.9%
3738031	5.1.4.271 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361	0.57	43.0	2.76e-01	85.1%	36.2%
None	—		0.56	42.0	2.69e-01	83.6%	28.4%
5039311	3504.3.1.1 ↗	beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N	0.56	39.0	3.08e-01	74.6%	70.7%
4949965	3504.3.1.1 ↗	beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N	0.56	38.0	3.06e-01	74.6%	70.3%
3499785	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.54	44.0	2.84e-01	97.0%	68.1%
3575383	5.1.4.12 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema	0.54	44.0	2.92e-01	92.5%	83.0%
3230613	3755.3.1.410 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Nup88	0.54	42.0	2.58e-01	92.5%	22.8%
5039633	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.53	36.0	3.52e-01	74.6%	63.5%
5024242	3504.3.1.1 ↗	beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N	0.53	39.0	3.02e-01	79.1%	71.0%
3908974	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.53	41.0	3.05e-01	88.1%	32.8%
5024498	3504.3.1.1 ↗	beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N	0.53	36.0	2.96e-01	71.6%	74.8%

D3 medium residues 255-374

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tzvA00	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.65	42.0	3.99e-01	92.5%	54.6%
1lvfB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	35.0	3.73e-01	87.5%	68.3%
2z99A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	37.0	4.22e-01	100.0%	97.7%
4lunU00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.50	45.0	3.38e-01	100.0%	54.0%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4669976	195.1.1.0 ↗	alpha complex topology › NusB-like › NusB-like › NusB-like	0.62	38.0	3.69e-01	88.3%	53.3%
3516129	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.59	33.0	3.50e-01	96.7%	61.9%
3486171	105.1.1.0 ↗	alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain	0.56	35.0	3.32e-01	87.5%	50.3%
4484832	589.1.2.1 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C	0.53	37.0	3.31e-01	70.8%	74.4%
3720559	633.12.1.0 ↗	alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like	0.52	39.0	3.71e-01	78.3%	82.9%
4960231	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.52	36.0	3.38e-01	70.8%	69.0%
3560590	3755.3.1.142 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › FAM186A-B_C	0.51	38.0	3.57e-01	78.3%	72.7%
3397545	174.1.1.1 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin	0.51	36.0	3.48e-01	75.0%	71.4%