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URC17530.1

Arc-Vir

ON548430__URC17530.1__X__00049

Identity

Accession:
ON548430 ↗
Protein ID:
URC17530.1 ↗
Kingdom:
archaea

Quality

87.5 mean pLDDT

Taxonomy

Lokiarchaeota_virus_Skoll_Meg22_1214

TaxID: 2946037

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.68 52.0 3.93e-01 82.8% 60.1%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 42.0 4.05e-01 86.2% 61.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 3.72e-01 100.0% 42.6%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.61 37.0 3.14e-01 100.0% 33.7%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 49.0 4.25e-01 100.0% 86.9%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.59 41.0 2.92e-01 75.9% 71.6%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 42.0 2.92e-01 84.5% 80.4%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.57 45.0 3.51e-01 100.0% 70.2%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 51.0 3.53e-01 100.0% 57.0%
3njfA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 49.0 4.01e-01 100.0% 89.3%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.55 42.0 2.88e-01 87.9% 44.6%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.55 44.0 4.58e-01 98.3% 100.0%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.54 40.0 2.71e-01 86.2% 20.8%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.86e-01 81.0% 78.3%
3djlA03 2.40.110.20 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › 0.53 41.0 3.10e-01 87.9% 32.7%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.53 42.0 3.08e-01 93.1% 35.6%
4m3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 2.97e-01 87.9% 42.1%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.19e-01 100.0% 51.3%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.50 36.0 2.53e-01 81.0% 58.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4226251 375.1.1.252 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 0.71 51.0 5.05e-01 100.0% 73.3%
5041400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 46.0 5.04e-01 96.6% 91.1%
3265494 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 41.0 4.54e-01 100.0% 86.7%
3938274 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.63 45.0 3.13e-01 77.6% 68.8%
4137758 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.62 47.0 4.94e-01 94.8% 98.0%
3707345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 3.66e-01 74.1% 80.0%
2157301 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.59 44.0 4.17e-01 100.0% 67.1%
3941021 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.59 46.0 2.94e-01 86.2% 23.1%
5044388 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 4.47e-01 100.0% 94.0%
5050199 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 39.0 2.97e-01 70.7% 29.1%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 44.0 4.21e-01 100.0% 71.4%
5002173 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 41.0 3.59e-01 94.8% 48.9%
4995812 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.58 47.0 4.03e-01 94.8% 93.0%
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 42.0 4.46e-01 100.0% 92.0%
3343242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 36.0 3.94e-01 100.0% 90.0%
5004087 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 46.0 4.22e-01 100.0% 68.8%
4962280 375.1.1.347 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26237 0.56 39.0 4.23e-01 100.0% 95.6%
3725926 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.56 37.0 3.24e-01 96.6% 47.1%
1203297 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.55 42.0 2.88e-01 87.9% 44.6%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.55 39.0 3.71e-01 75.9% 78.6%
3515524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 2.89e-01 70.7% 54.3%
3940064 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.54 44.0 2.93e-01 100.0% 22.1%
4418043 207.12.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Protein M antibody-binding region › Protein M antibody-binding region 0.53 40.0 2.51e-01 87.9% 20.7%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.53 40.0 3.69e-01 81.0% 77.3%
4993469 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 43.0 3.95e-01 100.0% 68.8%
3243790 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.53 42.0 3.18e-01 100.0% 55.6%
3736443 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.52 43.0 2.80e-01 100.0% 42.9%
4982831 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 45.0 2.66e-01 100.0% 48.7%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.51 40.0 3.72e-01 100.0% 66.3%
4942818 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.51 35.0 2.78e-01 72.4% 43.6%
5041730 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 44.0 3.37e-01 100.0% 48.3%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.51 36.0 3.50e-01 79.3% 80.0%
3526525 5.1.3.161 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_6 0.50 36.0 2.29e-01 77.6% 88.2%