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ON602738.1__UVX30253.1__S13a_00047__00045

Bact-Vir

ON602738.1__UVX30253.1__S13a_00047__00045

Identity

Accession:
ON602738 ↗
Kingdom:
phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_VLCpiS13a

TaxID: 2874885

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 4.97e-01 100.0% 71.4%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.65 37.0 3.98e-01 84.4% 66.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.43e-01 100.0% 68.1%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.40e-01 100.0% 65.1%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.38e-01 100.0% 88.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.95e-01 100.0% 90.9%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.33e-01 100.0% 67.9%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 33.0 3.21e-01 85.9% 45.8%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.73e-01 100.0% 82.4%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.24e-01 96.9% 83.6%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 3.83e-01 87.5% 63.0%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.58 39.0 3.49e-01 100.0% 47.4%
4b28A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.57 39.0 2.83e-01 71.9% 56.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.21e-01 100.0% 92.0%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 31.0 3.85e-01 70.3% 100.0%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 36.0 3.44e-01 85.9% 52.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.13e-01 100.0% 71.4%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.86e-01 78.1% 95.9%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.55 44.0 3.90e-01 95.3% 79.8%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 35.0 3.38e-01 85.9% 56.2%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.54 46.0 3.66e-01 96.9% 71.2%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.89e-01 93.8% 47.5%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.86e-01 85.9% 78.1%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 45.0 4.24e-01 100.0% 82.5%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 36.0 3.13e-01 76.6% 44.7%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 39.0 2.79e-01 79.7% 65.0%
1a0iA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.62e-01 90.6% 98.0%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 2.87e-01 81.2% 66.9%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.51 39.0 2.76e-01 87.5% 86.4%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.75e-01 93.8% 74.0%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.42e-01 93.8% 83.9%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.69e-01 93.8% 33.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931904 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.72 47.0 5.00e-01 100.0% 78.2%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 4.90e-01 100.0% 78.2%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.70 47.0 3.44e-01 100.0% 25.7%
3609597 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.70 46.0 4.77e-01 100.0% 73.3%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.67 47.0 5.08e-01 100.0% 94.0%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 46.0 4.20e-01 100.0% 54.1%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.66 45.0 4.71e-01 100.0% 79.3%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 46.0 5.06e-01 100.0% 94.0%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 46.0 4.40e-01 100.0% 62.7%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.99e-01 100.0% 89.1%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 45.0 4.21e-01 100.0% 57.5%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.65 45.0 4.64e-01 100.0% 78.0%
140210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.43e-01 100.0% 68.1%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 45.0 4.55e-01 100.0% 75.4%
4277213 4.1.1.431 ↗ beta barrels › SH3 › SH3 › SH3 › PF27152 0.63 44.0 4.35e-01 100.0% 68.6%
3995431 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 53.0 5.05e-01 100.0% 82.7%
4929875 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 46.0 3.98e-01 100.0% 51.0%
3453681 4.1.1.190 ↗ beta barrels › SH3 › SH3 › SH3 › Transposase_23 0.62 53.0 4.31e-01 100.0% 63.8%
4041343 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.62 43.0 4.76e-01 95.3% 96.0%
3243143 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.66e-01 100.0% 83.1%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.46e-01 100.0% 75.7%
3867384 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.60 51.0 4.80e-01 100.0% 78.8%
3437280 4.1.1.298 ↗ beta barrels › SH3 › SH3 › SH3 › PF26133 0.57 48.0 4.37e-01 100.0% 92.6%
4988761 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 43.0 3.99e-01 100.0% 61.1%
5036592 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 43.0 4.18e-01 100.0% 72.0%
5043533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.69e-01 100.0% 90.6%
3680492 4.1.1.298 ↗ beta barrels › SH3 › SH3 › SH3 › PF26133 0.57 48.0 3.93e-01 98.4% 68.0%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.56 43.0 4.41e-01 100.0% 90.0%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.56 47.0 4.49e-01 100.0% 80.0%
3244943 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 3.66e-01 84.4% 82.9%
4962778 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.55 45.0 4.08e-01 100.0% 68.7%
4416106 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.55 42.0 3.41e-01 87.5% 59.7%
3497046 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.70e-01 92.2% 81.7%
1221497 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.83e-01 90.6% 89.8%
3925426 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.54 45.0 3.62e-01 100.0% 59.3%
3793656 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.53 46.0 3.61e-01 100.0% 84.1%
4264105 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 4.32e-01 92.2% 88.6%
4237317 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.53 41.0 4.19e-01 82.8% 95.0%
3388070 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.53 40.0 4.10e-01 93.8% 88.3%
3520119 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.53 43.0 2.70e-01 93.8% 50.4%
3953730 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.53 42.0 2.92e-01 93.8% 90.4%
3171984 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.39e-01 100.0% 75.8%
3915693 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 37.0 3.70e-01 89.1% 73.8%
1005326 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.53 39.0 3.99e-01 93.8% 84.4%
4512566 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.53 34.0 3.82e-01 81.2% 93.3%
5043132 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.52 46.0 4.21e-01 100.0% 80.0%
4961940 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.52 44.0 3.84e-01 100.0% 65.7%
3648276 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.52 44.0 3.57e-01 100.0% 48.8%
5015437 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 41.0 3.33e-01 89.1% 77.0%
4656484 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.52 42.0 3.31e-01 93.8% 46.7%
3615586 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.52 42.0 2.61e-01 93.8% 43.1%
4395927 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 41.0 3.41e-01 93.8% 80.0%
3944434 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.67e-01 89.1% 88.4%
5053095 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.37e-01 100.0% 48.7%
4206425 2.1.1.48 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.51 40.0 4.11e-01 85.9% 100.0%
2896191 5.1.5.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ,PQQ_2 0.51 42.0 2.47e-01 93.8% 81.0%
3174658 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 38.0 3.44e-01 87.5% 58.9%
4998344 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 41.0 3.30e-01 93.8% 44.0%
4018320 5.1.8.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 0.50 41.0 3.03e-01 93.8% 36.8%
4996016 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.50 40.0 3.11e-01 93.8% 38.1%