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ON602749.1__UVX30944.1__P4a_00012__00012

Bact-Vir

ON602749.1__UVX30944.1__P4a_00012__00012

Identity

Accession:
ON602749 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Kaypoctavirus› Klebsiella_phage_VLCpiP4a

TaxID: 2874881

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ediA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 45.0 3.30e-01 79.2% 33.1%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.62 50.0 2.95e-01 90.6% 32.3%
1zarA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 46.0 4.01e-01 81.1% 97.5%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 44.0 3.79e-01 79.2% 56.3%
1ub1A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.61 45.0 3.45e-01 81.1% 51.2%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.74e-01 98.1% 52.1%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.37e-01 90.6% 35.4%
2i7xA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 48.0 3.14e-01 98.1% 44.8%
3a4yA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 49.0 3.21e-01 98.1% 42.6%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 40.0 3.52e-01 73.6% 88.0%
2wylC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 47.0 2.99e-01 96.2% 21.5%
2fb5A02 3.40.1700.10 Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain 0.57 49.0 3.76e-01 100.0% 94.7%
2i7tA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 46.0 3.06e-01 98.1% 37.4%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 46.0 3.16e-01 98.1% 49.8%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 43.0 3.31e-01 86.8% 41.4%
1zkpC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 48.0 3.11e-01 98.1% 26.1%
4zglD00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 40.0 3.26e-01 77.4% 85.3%
3g1pA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 44.0 2.98e-01 96.2% 26.1%
2prvA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.55 45.0 3.37e-01 98.1% 83.0%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 39.0 2.48e-01 81.1% 25.2%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.17e-01 81.1% 70.6%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 3.25e-01 96.2% 75.2%
3wgxB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.36e-01 88.7% 90.2%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 41.0 3.29e-01 86.8% 92.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 3.68e-01 79.2% 88.7%
6hjfA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 41.0 3.06e-01 98.1% 31.2%
3o0wA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.74e-01 88.7% 47.0%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.84e-01 100.0% 63.3%
1zo0A00 3.40.630.60 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.52 39.0 3.10e-01 86.8% 40.5%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 40.0 3.27e-01 96.2% 50.8%
1ib6A02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.51 39.0 2.79e-01 84.9% 27.7%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 38.0 2.98e-01 88.7% 65.4%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.51 37.0 3.47e-01 81.1% 88.6%
2rlpA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 37.0 3.46e-01 79.2% 62.7%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 36.0 2.78e-01 83.0% 75.6%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 39.0 2.83e-01 92.5% 81.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943340 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 57.0 4.97e-01 98.1% 74.1%
3991019 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.64 43.0 4.11e-01 75.5% 58.5%
3803349 247.1.1.16 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.64 53.0 3.34e-01 98.1% 36.8%
3365981 247.1.1.16 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.64 53.0 3.62e-01 98.1% 57.6%
3412142 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.63 53.0 4.20e-01 100.0% 72.5%
3778012 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.62 41.0 3.61e-01 77.4% 43.5%
3539250 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.62 48.0 3.97e-01 90.6% 53.3%
3705795 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 53.0 3.17e-01 100.0% 28.5%
4177936 2004.1.1.929 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FliJ 0.62 52.0 3.15e-01 98.1% 51.2%
3509752 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.61 53.0 3.23e-01 100.0% 29.7%
3394227 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 45.0 2.87e-01 81.1% 29.7%
3445705 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 46.0 4.20e-01 83.0% 68.6%
3967070 809.1.1.8 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF2845 0.59 43.0 3.98e-01 79.2% 65.7%
4978276 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.59 49.0 3.48e-01 98.1% 84.3%
4929475 247.1.1.16 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.59 48.0 3.18e-01 96.2% 32.2%
3391728 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.59 47.0 4.14e-01 92.5% 75.0%
1499068 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.58 49.0 3.40e-01 98.1% 54.6%
4941428 247.1.1.16 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.58 48.0 3.20e-01 98.1% 44.4%
5081581 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 45.0 3.00e-01 86.8% 41.7%
3920534 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.58 41.0 3.18e-01 86.8% 32.0%
4947361 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.58 47.0 3.11e-01 96.2% 33.3%
5015644 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.57 47.0 3.12e-01 98.1% 42.0%
3738504 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 41.0 3.34e-01 79.2% 43.6%
3755055 331.1.1.12 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF155 0.57 42.0 3.19e-01 81.1% 80.0%
3258441 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.57 44.0 4.10e-01 92.5% 86.7%
3480635 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.57 47.0 2.95e-01 98.1% 35.6%
3966359 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 42.0 2.68e-01 81.1% 37.4%
3811724 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.57 41.0 4.00e-01 94.3% 70.7%
5018058 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.57 46.0 3.03e-01 96.2% 34.4%
5011326 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.56 46.0 3.23e-01 96.2% 34.2%
2448269 247.1.1.2 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,RMMBL 0.56 46.0 3.18e-01 96.2% 40.5%
5045231 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.56 46.0 3.26e-01 98.1% 47.1%
5019922 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 2.73e-01 86.8% 29.4%
3965967 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 40.0 3.32e-01 77.4% 41.0%
4120495 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 44.0 2.72e-01 98.1% 39.0%
4015823 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.55 46.0 3.21e-01 100.0% 57.1%
4314842 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 40.0 3.33e-01 81.1% 75.2%
3526425 11.1.1.811 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CD34_antigen 0.55 43.0 3.54e-01 92.5% 66.4%
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 46.0 3.53e-01 100.0% 40.7%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 45.0 3.79e-01 100.0% 57.0%
5030605 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.54 46.0 3.46e-01 100.0% 48.6%
4201417 3859.1.1.2 ↗ alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › PF27472 0.54 43.0 3.22e-01 88.7% 79.3%
3973700 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.54 44.0 3.74e-01 96.2% 77.9%
4997517 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 43.0 2.86e-01 98.1% 41.1%
3631472 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.53 43.0 3.04e-01 98.1% 51.0%
3497765 247.1.1.9 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL 0.53 44.0 3.01e-01 98.1% 56.7%
3485073 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.53 43.0 2.98e-01 98.1% 56.7%
3266017 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 2.59e-01 88.7% 22.3%
4123847 7579.1.1.27 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.52 37.0 2.40e-01 81.1% 26.2%
3430258 247.1.1.9 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL 0.52 42.0 3.12e-01 98.1% 57.5%
5079233 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 41.0 2.75e-01 98.1% 61.2%
4309203 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.51 40.0 2.93e-01 96.2% 84.4%
4940318 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.50 41.0 2.90e-01 98.1% 50.5%
3468289 1.1.1.20 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.50 37.0 2.43e-01 90.6% 32.1%