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ON602754.1__UVX31347.1__A1j_00051__00051

Bact-Vir

ON602754.1__UVX31347.1__A1j_00051__00051

Identity

Accession:
ON602754 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Drulisvirus› Klebsiella_phage_VLCpiA1j

TaxID: 2874861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 74-199_243-263
PDB
Domain cluster: rep: OY979411.1__CAK6605633.1__K1PH164C1_LOCUS55__00055__D379-517
D2 medium residues 264-370
PDB
Domain cluster: rep: MN061582.1__QFR59036.1__X__00051__D117-259
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.72 27.0 3.11e-01 80.4% 47.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 27.0 3.29e-01 72.9% 62.7%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.58 34.0 3.19e-01 95.3% 45.6%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.56 29.0 3.94e-01 88.8% 98.2%
3oulA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 32.0 2.53e-01 71.0% 27.0%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 44.0 3.16e-01 89.7% 39.1%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 43.0 4.03e-01 88.8% 96.4%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 45.0 3.19e-01 92.5% 37.5%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 36.0 3.96e-01 70.1% 98.8%
3w5mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 3.10e-01 76.6% 78.2%
4ew6A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 38.0 3.21e-01 77.6% 64.6%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 40.0 3.38e-01 86.9% 69.5%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.93e-01 95.3% 35.7%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 41.0 3.11e-01 88.8% 85.8%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.40e-01 93.5% 85.7%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 45.0 3.69e-01 99.1% 82.5%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.50 42.0 3.76e-01 91.6% 81.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1513837 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 26.0 3.36e-01 83.2% 63.3%
5024241 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.62 45.0 4.76e-01 82.2% 85.3%
5027536 2003.1.1.378 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA_C 0.61 42.0 3.22e-01 71.0% 81.9%
4302533 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.61 50.0 4.61e-01 89.7% 95.7%
3228053 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 31.0 4.18e-01 81.3% 100.0%
3584039 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.58 52.0 3.51e-01 99.1% 39.0%
3624447 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 36.0 3.60e-01 92.5% 61.8%
4353121 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 36.0 3.78e-01 90.7% 69.0%
4963509 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.98e-01 70.1% 89.0%
5001388 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.55 34.0 3.21e-01 79.4% 49.2%
3276895 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 3.05e-01 92.5% 23.5%
3255946 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 30.0 3.44e-01 84.1% 71.2%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.53 29.0 3.49e-01 91.6% 80.0%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 28.0 3.58e-01 86.9% 93.3%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 26.0 3.27e-01 88.8% 86.2%
3268736 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.51 38.0 2.48e-01 79.4% 50.3%
3654011 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.50 31.0 3.14e-01 81.3% 61.0%
4566718 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.50 35.0 3.79e-01 80.4% 85.6%
D3 medium residues 371-454
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 34.0 4.64e-01 70.2% 97.4%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 33.0 3.32e-01 79.8% 51.2%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.17e-01 73.8% 72.7%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.50 35.0 3.01e-01 73.8% 65.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4300768 7516.1.1.10 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CofC 0.54 39.0 2.91e-01 75.0% 71.2%
4085794 226.1.1.6 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › SANBR_BTB 0.53 42.0 3.30e-01 86.9% 63.2%
3505430 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 36.0 3.12e-01 70.2% 82.3%
3368300 221.1.1.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.52 40.0 3.58e-01 83.3% 90.8%
3477612 221.1.1.61 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Kindlin_2_N 0.51 36.0 3.46e-01 73.8% 98.0%
3739985 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.51 35.0 2.85e-01 71.4% 80.6%
D4 medium residues 455-571
PDB
Domain cluster: rep: OQ302138.1__WDS60835.1__X__00045__D99-200