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ON602758.1__UVX31569.1__M12a_00058__00058

Bact-Vir

ON602758.1__UVX31569.1__M12a_00058__00058

Identity

Accession:
ON602758 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mascletvirus› Klebsiella_phage_VLCpiM12a

TaxID: 2874879

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-73
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 53.0 4.41e-01 88.6% 91.6%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 52.0 4.31e-01 87.1% 82.4%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.65 44.0 3.86e-01 70.0% 68.6%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 54.0 4.46e-01 92.9% 91.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 4.47e-01 71.4% 100.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.90e-01 77.1% 93.5%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.84e-01 92.9% 93.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 42.0 4.35e-01 75.7% 85.1%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.60 41.0 3.66e-01 71.4% 100.0%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 49.0 3.18e-01 92.9% 73.9%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 46.0 2.98e-01 88.6% 43.8%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.59 49.0 3.26e-01 92.9% 67.1%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 45.0 2.95e-01 90.0% 65.7%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 47.0 3.26e-01 95.7% 69.0%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.73e-01 87.1% 60.5%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.74e-01 100.0% 67.2%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 3.14e-01 98.6% 78.7%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.42e-01 87.1% 98.5%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 45.0 3.00e-01 98.6% 84.4%
3vasA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 44.0 2.95e-01 90.0% 40.8%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.99e-01 100.0% 81.8%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 46.0 3.49e-01 100.0% 81.2%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 3.44e-01 100.0% 80.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.52 36.0 3.20e-01 72.9% 56.9%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 36.0 3.17e-01 80.0% 62.0%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 38.0 2.80e-01 81.4% 60.5%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 44.0 3.12e-01 97.1% 73.8%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 40.0 2.80e-01 95.7% 81.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251443 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.71 52.0 4.29e-01 78.6% 76.8%
4061621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 3.48e-01 72.9% 27.7%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.68 52.0 5.38e-01 91.4% 87.7%
4972485 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.93e-01 71.4% 94.5%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.88e-01 77.1% 90.9%
3661053 5.1.5.132 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF7899 0.65 52.0 3.21e-01 88.6% 29.9%
3222106 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 44.0 3.70e-01 71.4% 55.0%
4405252 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.64 49.0 4.05e-01 87.1% 87.9%
3438347 5.1.5.63 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.64 50.0 4.04e-01 87.1% 82.9%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.98e-01 90.0% 93.3%
4203592 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.39e-01 70.0% 83.1%
3964595 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.63 45.0 4.26e-01 75.7% 91.8%
4029617 5.1.11.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.63 50.0 3.09e-01 90.0% 20.9%
3445272 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 49.0 3.19e-01 87.1% 80.8%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.63 43.0 4.47e-01 71.4% 83.1%
3939294 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.21e-01 90.0% 37.1%
3194888 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.63 45.0 3.52e-01 77.1% 51.2%
3622846 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 42.0 4.70e-01 70.0% 100.0%
3453930 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 3.25e-01 88.6% 49.1%
5015593 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.61 44.0 3.70e-01 77.1% 82.5%
4247114 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.61 43.0 3.05e-01 74.3% 93.0%
4220608 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.60 46.0 4.51e-01 91.4% 77.3%
4464751 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.60 44.0 3.27e-01 77.1% 96.5%
3230083 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 40.0 3.72e-01 71.4% 53.3%
4118011 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 49.0 4.60e-01 90.0% 85.9%
3654903 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 49.0 3.26e-01 91.4% 93.9%
3888357 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 47.0 3.19e-01 90.0% 61.7%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.34e-01 92.9% 80.0%
3741447 5.1.4.42 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_4 0.59 52.0 3.37e-01 100.0% 80.3%
4104915 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.59 42.0 4.49e-01 90.0% 90.0%
3940017 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.59 46.0 3.13e-01 88.6% 53.1%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.47e-01 90.0% 98.2%
3266157 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.58 39.0 2.66e-01 70.0% 90.2%
3826459 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.58 44.0 3.08e-01 85.7% 58.1%
3608369 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 45.0 3.10e-01 91.4% 87.2%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 42.0 4.12e-01 78.6% 93.3%
3275404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.09e-01 71.4% 83.3%
5055252 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.57 45.0 3.00e-01 90.0% 27.5%
4678702 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.57 44.0 3.73e-01 87.1% 60.0%
3335974 3304.1.1.2 ↗ a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.56 43.0 3.55e-01 87.1% 59.3%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 37.0 3.52e-01 71.4% 54.4%
3609116 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 3.94e-01 92.9% 80.3%
4627488 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.55 46.0 2.95e-01 98.6% 91.7%
4569026 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 39.0 3.03e-01 75.7% 93.1%
None — 0.55 46.0 2.97e-01 95.7% 83.2%
3980188 5.1.3.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NANM 0.55 45.0 2.93e-01 97.1% 86.1%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 4.15e-01 91.4% 93.1%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.54 44.0 4.21e-01 92.9% 76.5%
3505437 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 44.0 4.15e-01 95.7% 74.1%
3927742 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 42.0 2.89e-01 90.0% 51.0%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 4.11e-01 92.9% 100.0%
3593222 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.02e-01 90.0% 90.2%
3259482 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.94e-01 88.6% 87.1%
4203220 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.52 45.0 3.40e-01 100.0% 98.3%
3237314 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.51 42.0 3.91e-01 92.9% 93.3%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 4.17e-01 90.0% 100.0%
3721094 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 38.0 2.84e-01 85.7% 61.8%
4538466 3197.1.1.1 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.50 38.0 3.17e-01 82.9% 50.0%
D2 high residues 88-151
PDB
Domain cluster: rep: OL944604.1__UKL14856.1__X__00025__D5-66