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ON602760.1__UVX31693.1__S13d_00029__00029

Bact-Vir

ON602760.1__UVX31693.1__S13d_00029__00029

Identity

Accession:
ON602760 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-43
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.77 63.0 5.75e-01 100.0% 78.6%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.76 52.0 3.75e-01 100.0% 25.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 53.0 4.41e-01 92.1% 42.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.03e-01 100.0% 56.7%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.74 47.0 4.16e-01 84.2% 44.4%
4wedA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.74 53.0 3.20e-01 78.9% 38.3%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 58.0 4.33e-01 100.0% 88.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 47.0 4.04e-01 100.0% 40.3%
1uqwA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.72 52.0 3.47e-01 78.9% 69.8%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 58.0 3.86e-01 100.0% 63.1%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.68 55.0 4.57e-01 100.0% 51.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 3.86e-01 100.0% 32.4%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 56.0 4.29e-01 97.4% 69.8%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 54.0 4.42e-01 97.4% 53.8%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 46.0 3.76e-01 84.2% 38.0%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.67 54.0 3.69e-01 100.0% 25.5%
4j31A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 54.0 3.15e-01 94.7% 39.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 52.0 4.72e-01 100.0% 63.3%
2ywlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 53.0 3.46e-01 92.1% 55.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 52.0 5.01e-01 100.0% 78.3%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.92e-01 100.0% 77.1%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 3.60e-01 71.1% 36.5%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 54.0 3.89e-01 100.0% 91.7%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.65 52.0 3.58e-01 94.7% 34.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.64 53.0 4.11e-01 100.0% 69.1%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 51.0 4.13e-01 89.5% 56.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.48e-01 100.0% 58.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.31e-01 100.0% 56.2%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 45.0 4.10e-01 84.2% 56.1%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.62 49.0 3.43e-01 89.5% 52.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 3.97e-01 100.0% 47.9%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.61 50.0 3.18e-01 100.0% 25.7%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.60 48.0 3.23e-01 92.1% 60.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 52.0 2.92e-01 100.0% 16.2%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 43.0 3.34e-01 100.0% 33.0%
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 2.92e-01 92.1% 51.4%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.18e-01 92.1% 41.4%
4zn0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.29e-01 97.4% 47.5%
8ajjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.58e-01 100.0% 92.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.52e-01 97.4% 85.1%
5e7gA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 3.82e-01 94.7% 72.3%
1xocA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.58 52.0 3.61e-01 100.0% 70.0%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.28e-01 100.0% 68.5%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 42.0 3.08e-01 100.0% 70.1%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 3.43e-01 97.4% 42.1%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 46.0 3.43e-01 100.0% 91.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 46.0 3.69e-01 100.0% 74.7%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 3.38e-01 92.1% 92.2%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.54 42.0 3.91e-01 100.0% 87.5%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.54 47.0 3.00e-01 100.0% 56.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 41.0 2.44e-01 100.0% 11.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.97e-01 100.0% 88.1%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.53 42.0 2.97e-01 100.0% 35.6%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.34e-01 100.0% 57.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.83e-01 100.0% 79.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.72e-01 100.0% 59.1%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.52 43.0 2.81e-01 100.0% 39.4%
5e7gA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.06e-01 86.8% 45.6%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 41.0 3.14e-01 92.1% 84.9%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.60e-01 100.0% 86.0%
1b9wA01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.51 41.0 3.70e-01 86.8% 68.6%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.50 31.0 2.94e-01 89.5% 52.2%
1khdD02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.50 44.0 2.72e-01 100.0% 25.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.87 77.0 5.85e-01 100.0% 44.7%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 61.0 5.41e-01 100.0% 61.7%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.00e-01 100.0% 54.3%
4995072 101.41.1.0 alpha arrays › HTH › MRB1590 C-terminal domain › MRB1590 C-terminal domain 0.71 53.0 3.90e-01 81.6% 33.0%
5081601 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 49.0 3.29e-01 73.7% 36.4%
4937389 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.71 51.0 3.71e-01 78.9% 73.6%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.69 54.0 4.70e-01 100.0% 61.4%
3584429 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.68 50.0 3.56e-01 86.8% 82.2%
3601070 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.73e-01 100.0% 75.4%
4948506 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.67 53.0 3.08e-01 92.1% 42.7%
5036420 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.66 55.0 3.42e-01 100.0% 32.9%
4969727 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.66 52.0 3.42e-01 89.5% 52.8%
3236612 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.65 48.0 3.21e-01 84.2% 44.8%
3833703 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 55.0 3.10e-01 100.0% 20.5%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.68e-01 100.0% 63.3%
140040 4216.1.1.3 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › LFE_1968-like 0.65 52.0 3.58e-01 94.7% 34.8%
5028765 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.64 52.0 3.55e-01 94.7% 62.0%
4940843 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.64 50.0 2.89e-01 92.1% 55.1%
4995694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.76e-01 100.0% 72.7%
2834165 3740.1.1.1 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.63 53.0 3.22e-01 100.0% 48.9%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 50.0 3.86e-01 100.0% 42.9%
4565837 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.63 50.0 3.92e-01 100.0% 43.2%
3186907 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.62 49.0 3.05e-01 100.0% 23.0%
4129210 212.1.1.14 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.62 49.0 3.31e-01 100.0% 58.4%
3734754 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.61 48.0 2.88e-01 94.7% 44.8%
3582026 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.61 52.0 4.16e-01 100.0% 86.3%
4399542 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 48.0 3.91e-01 100.0% 48.9%
1413813 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 42.0 3.84e-01 71.1% 76.4%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.61 39.0 3.45e-01 100.0% 39.0%
3736412 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 48.0 2.89e-01 97.4% 44.7%
None 0.61 46.0 2.73e-01 92.1% 49.1%
4523548 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.61 51.0 4.03e-01 100.0% 75.3%
3329019 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 43.0 4.13e-01 84.2% 70.0%
4395961 212.1.1.14 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.60 49.0 3.30e-01 100.0% 61.8%
4931543 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.60 50.0 3.07e-01 100.0% 44.1%
3602511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.28e-01 100.0% 70.0%
4262261 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 48.0 4.32e-01 94.7% 70.9%
3476478 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 3.56e-01 100.0% 37.9%
3536857 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.59 52.0 3.38e-01 100.0% 73.3%
4961406 304.136.1.0 a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain 0.57 50.0 3.74e-01 100.0% 80.0%
4975714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.37e-01 100.0% 76.4%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.56 46.0 3.85e-01 100.0% 54.7%
154312 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.56 38.0 3.21e-01 100.0% 38.6%
3261763 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 46.0 3.74e-01 94.7% 80.0%
3235630 209.1.1.14 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.56 41.0 2.62e-01 100.0% 15.6%
3409299 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 44.0 3.70e-01 100.0% 47.5%
3218198 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.25e-01 100.0% 69.1%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.55 42.0 3.53e-01 100.0% 44.7%
3387649 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 45.0 3.23e-01 100.0% 74.1%
4276957 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.55 44.0 4.04e-01 97.4% 72.7%
3740221 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 41.0 2.95e-01 100.0% 33.1%
3967527 4216.1.1.1 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.54 45.0 3.00e-01 100.0% 30.2%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 38.0 2.95e-01 100.0% 33.8%
3855038 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.52 43.0 2.91e-01 100.0% 32.5%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 2.34e-01 100.0% 8.9%
3587134 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.51 45.0 3.99e-01 100.0% 85.5%
3213954 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.51 39.0 2.49e-01 84.2% 22.6%
3504417 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 37.0 3.16e-01 100.0% 44.4%
3974680 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.51 35.0 2.34e-01 100.0% 15.1%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.51 38.0 3.25e-01 100.0% 54.1%
4519278 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.50 41.0 2.36e-01 97.4% 18.9%