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ON602761.1__UVX31745.1__A1g_00001__00001

Bact-Vir

ON602761.1__UVX31745.1__A1g_00001__00001

Identity

Accession:
ON602761 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Drulisvirus› Klebsiella_phage_VLCpiA1g

TaxID: 2874858

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-113
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 28.8 1.00e-06 50.8% 60.9%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jmkA00 3.30.420.600 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Thermoplasma acidophilum protein TA0956 0.59 50.0 4.13e-01 100.0% 51.8%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 35.0 2.86e-01 98.3% 32.2%
5ijgA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 36.0 2.52e-01 71.2% 83.6%
2i87A03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 32.0 3.08e-01 71.2% 49.3%
1ynjJ01 1.10.1790.20 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.51 43.0 3.45e-01 100.0% 48.3%
1gyoA00 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.51 42.0 3.56e-01 96.6% 94.3%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 41.0 3.46e-01 94.9% 86.5%
3if2A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 36.0 2.27e-01 79.7% 91.5%
3bzvB00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.50 41.0 3.76e-01 93.2% 97.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949181 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.80 62.0 5.64e-01 89.8% 64.0%
3799636 109.4.1.268 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LARP1_HEAT 0.60 40.0 2.76e-01 71.2% 22.2%
3705318 304.34.1.0 ↗ a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.60 40.0 2.91e-01 96.6% 22.1%
3631105 5.1.4.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CRT10 0.55 42.0 2.55e-01 88.1% 28.1%
5025087 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.53 40.0 3.98e-01 81.4% 88.3%
115641 2484.1.1.42 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_2 0.52 38.0 2.61e-01 81.4% 31.7%
3454862 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.51 43.0 2.82e-01 100.0% 34.7%
4622598 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.51 44.0 3.66e-01 100.0% 82.7%
8635 139.1.1.1 ↗ few secondary structure elements › Multiheme cytochromes › Cytochrome c3-like › Cytochrome c3-like › Cytochrom_CIII 0.51 42.0 3.56e-01 96.6% 94.3%
D2 medium residues 1-54_116-130
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 31.0 3.42e-01 94.2% 58.2%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 45.0 3.00e-01 94.2% 79.6%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 29.0 3.10e-01 91.3% 58.9%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.53 36.0 4.13e-01 98.6% 100.0%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.52 36.0 3.27e-01 75.4% 81.7%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.52 30.0 3.17e-01 85.5% 62.9%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 2.96e-01 97.1% 42.2%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 39.0 3.22e-01 97.1% 73.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.63 39.0 3.77e-01 94.2% 55.0%
3368421 101.1.2.497 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25874 0.57 41.0 3.43e-01 85.5% 42.4%
3218324 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.55 23.0 3.00e-01 85.5% 67.5%
3509521 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 44.0 3.45e-01 92.8% 80.0%
3236073 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.51 40.0 3.94e-01 94.2% 77.3%