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ON615601.1__UTS51996.1__X__00048

Bact-Vir

ON615601.1__UTS51996.1__X__00048

Identity

Accession:
ON615601 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_BUCT-ZZ01

TaxID: 2951202

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-79
PDB
Domain cluster: rep: IMGVR_UViG_3300026205_000020-3300026205-Ga0208406_10009714__D12-71
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21379.3 best Gp6-like_1st 74.4 6.90e-21 100.0% 93.2%
D2 high residues 289-380
PDB
Domain cluster: rep: IMGVR_UViG_3300026205_000020-3300026205-Ga0208406_10009714__D290-380
D3 high residues 458-563
PDB
Domain cluster: rep: IMGVR_UViG_3300006341_000223-3300006341-Ga0068493_101933357__D190-284
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 35.0 4.41e-01 85.8% 85.7%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 40.0 3.59e-01 72.6% 97.4%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.56 47.0 3.92e-01 93.4% 65.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 32.0 3.91e-01 72.6% 100.0%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 44.0 3.84e-01 92.5% 67.1%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 44.0 3.94e-01 93.4% 70.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.52 39.0 3.63e-01 79.2% 66.2%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.64e-01 76.4% 95.8%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.52 44.0 3.89e-01 97.2% 94.6%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 42.0 3.93e-01 100.0% 70.5%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 37.0 2.80e-01 76.4% 88.7%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.50 40.0 3.29e-01 86.8% 82.0%
1im3D00 2.60.40.1200 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.96e-01 100.0% 89.5%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.50 40.0 3.28e-01 87.7% 85.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 34.0 4.36e-01 89.6% 98.3%
4991022 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.58 40.0 3.68e-01 71.7% 97.9%
3659030 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.58 40.0 3.59e-01 71.7% 93.8%
3442241 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 44.0 3.18e-01 81.1% 48.6%
3978775 4200.1.1.1 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF 0.56 47.0 3.94e-01 93.4% 65.3%
2363 4200.1.1.1 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › YjbF 0.56 47.0 3.92e-01 93.4% 65.6%
5047608 4200.1.1.2 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.56 44.0 3.65e-01 85.8% 96.9%
3302171 11.10.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF 0.54 45.0 4.25e-01 93.4% 97.0%
4338912 5.1.4.257 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP, FG-GAP_3 0.54 45.0 2.92e-01 91.5% 87.7%
3720671 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.53 40.0 3.47e-01 84.0% 81.1%
3225768 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.52 41.0 3.56e-01 84.9% 71.2%
224067 6098.1.1.1 ↗ a+b two layers › BACOVA_05496-like › BACOVA_05496-like › BACOVA_05496-like › DUF4738 0.52 39.0 3.63e-01 79.2% 66.2%
3948055 222.1.1.6 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › YiiD_C 0.52 39.0 3.53e-01 81.1% 86.5%
3226630 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 43.0 3.76e-01 89.6% 92.5%
140426 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.51 41.0 3.33e-01 86.8% 82.8%
5056218 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 31.0 3.64e-01 70.8% 91.4%
3953766 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.51 39.0 3.31e-01 84.0% 84.3%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 36.0 3.82e-01 99.1% 85.3%
D4 medium residues 90-151_251-276
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.66 41.0 4.70e-01 86.4% 88.7%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 52.0 4.43e-01 100.0% 54.2%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.61 44.0 4.00e-01 77.3% 86.9%
4nreA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.61 53.0 4.86e-01 100.0% 76.7%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 52.0 5.10e-01 100.0% 91.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 51.0 4.67e-01 100.0% 74.2%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.55 44.0 3.21e-01 90.9% 95.7%
1ifrA00 2.60.40.1260 Mainly Beta › Sandwich › Immunoglobulin-like › Lamin Tail domain 0.55 47.0 4.41e-01 98.9% 84.1%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.55 41.0 4.09e-01 94.3% 76.9%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.57e-01 98.9% 86.1%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 40.0 3.75e-01 80.7% 64.9%
3djmA00 2.170.150.40 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Domain of unknown function (DUF427) 0.51 35.0 3.32e-01 71.6% 96.4%
5jtwA01 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 44.0 3.85e-01 100.0% 77.0%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.61e-01 80.7% 88.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002737 1.16.1.0 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I 0.76 59.0 6.01e-01 100.0% 85.9%
3598842 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.61 54.0 4.58e-01 100.0% 62.0%
5038472 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 4.55e-01 87.5% 90.0%
4927710 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 36.0 3.50e-01 100.0% 53.0%
3628368 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.59 52.0 4.70e-01 100.0% 71.2%
3215715 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.59 37.0 3.47e-01 100.0% 50.0%
3270538 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.58 51.0 4.60e-01 100.0% 82.4%
3407194 5093.1.1.2 ↗ a+b complex topology › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein › Baculo_F 0.58 41.0 2.69e-01 73.9% 51.1%
3828636 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 47.0 4.08e-01 90.9% 60.7%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.57 42.0 3.28e-01 80.7% 41.0%
4279392 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 34.0 3.39e-01 100.0% 55.8%
165179 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 34.0 3.20e-01 100.0% 48.2%
3908056 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 47.0 3.73e-01 100.0% 52.7%
4954081 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 47.0 3.98e-01 100.0% 56.2%
4997634 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.93e-01 100.0% 60.0%
3203691 11.1.1.667 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N 0.54 46.0 3.90e-01 98.9% 73.5%
3459780 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 42.0 3.64e-01 89.8% 62.8%
3770542 11.2.1.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.52 46.0 3.97e-01 100.0% 76.4%
D5 medium residues 152-248
PDB
Domain cluster: rep: IMGVR_UViG_3300023173_001715-3300023173-Ga0255776_100288841__D171-266
D6 medium residues 384-457_564-608
PDB
Domain cluster: rep: NC_054725.1__YP_010059442.1__KHQ85_gp192__00192__D466-576
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21871.2 best Gp6_C-III 28.4 1.90e-06 63.0% 92.1%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ezuA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.68 47.0 4.41e-01 72.3% 85.1%
2dj6B00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.65 45.0 4.65e-01 71.4% 73.9%
3jygA00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.61 43.0 3.71e-01 72.3% 76.7%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.58 39.0 4.58e-01 89.1% 98.8%
2ywmA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 27.0 2.77e-01 100.0% 44.3%
1lc0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 35.0 3.27e-01 87.4% 48.3%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.69e-01 72.3% 66.4%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 43.0 2.90e-01 88.2% 67.2%
3c6vA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 39.0 3.72e-01 79.0% 88.1%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 33.0 2.85e-01 87.4% 39.2%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 33.0 2.87e-01 87.4% 40.2%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.50 34.0 3.77e-01 79.8% 87.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977755 3228.1.1.2 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.86 60.0 7.01e-01 96.6% 100.0%
5002740 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.78 67.0 7.01e-01 98.3% 98.2%
3946544 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.77 64.0 6.73e-01 100.0% 99.0%
3407163 304.48.1.6 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.69 47.0 4.78e-01 70.6% 97.5%
3601652 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.68 47.0 4.77e-01 70.6% 94.8%
3723862 7575.1.1.1 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 0.58 45.0 3.36e-01 80.7% 98.9%
3596134 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 41.0 3.36e-01 84.9% 39.6%
4962024 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 31.0 2.70e-01 86.6% 34.6%
4956622 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.54 40.0 4.11e-01 77.3% 100.0%
3926658 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.51 38.0 2.56e-01 78.2% 74.8%
4945332 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.51 39.0 3.71e-01 80.7% 95.0%
4969565 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.50 43.0 4.03e-01 91.6% 94.5%
5026386 3636.1.1.1 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › HBB 0.50 42.0 4.03e-01 91.6% 95.7%