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ON631220.1__USL86655.1__CDGHABPJ_00197__00191
Bact-VirON631220.1__USL86655.1__CDGHABPJ_00197__00191
Identity
- Accession:
- ON631220 ↗
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Taxonomy
TaxID: 2734642
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 186-237
Domain cluster:
rep: AY682195.1__AAV35876.1__orf56__00056__D75-123
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07453.20 best | NUMOD1 | 24.5 | 3.60e-05 | 65.4% | 75.7% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.90 | 76.0 | 6.94e-01 | 100.0% | 70.6% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.65 | 57.0 | 4.90e-01 | 100.0% | 92.9% |
| 1wjvA01 | 3.30.1490.490 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.65 | 38.0 | 3.88e-01 | 100.0% | 58.8% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.60 | 40.0 | 3.81e-01 | 100.0% | 59.0% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 52.0 | 5.18e-01 | 100.0% | 100.0% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.59 | 46.0 | 4.14e-01 | 84.6% | 74.0% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 49.0 | 5.14e-01 | 100.0% | 100.0% |
| 4ba0A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 37.0 | 3.82e-01 | 98.1% | 66.7% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 4.71e-01 | 98.1% | 88.5% |
| 3oouA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 41.0 | 4.11e-01 | 96.2% | 76.4% |
| 2di3A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 48.0 | 4.21e-01 | 96.2% | 82.7% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.54 | 41.0 | 4.19e-01 | 82.7% | 90.0% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.54 | 41.0 | 4.37e-01 | 94.2% | 95.7% |
| 2khoA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 44.0 | 3.16e-01 | 94.2% | 86.2% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 46.0 | 3.65e-01 | 96.2% | 49.0% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 32.0 | 3.32e-01 | 96.2% | 66.7% |
| 7u37A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 45.0 | 4.27e-01 | 98.1% | 100.0% |
| 2i9dA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 34.0 | 2.41e-01 | 73.1% | 73.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.90 | 76.0 | 6.91e-01 | 100.0% | 69.6% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.86 | 76.0 | 6.33e-01 | 100.0% | 58.8% |
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.85 | 80.0 | 7.93e-01 | 100.0% | 98.1% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.83 | 71.0 | 6.44e-01 | 100.0% | 71.0% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.79 | 66.0 | 6.72e-01 | 98.1% | 96.0% |
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.78 | 64.0 | 6.51e-01 | 100.0% | 94.0% |
| 4643287 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.73 | 41.0 | 2.91e-01 | 86.5% | 19.3% |
| 3590852 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.71 | 50.0 | 3.98e-01 | 73.1% | 60.0% |
| 4961283 | 101.1.2.935 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C | 0.67 | 53.0 | 4.19e-01 | 88.5% | 77.1% |
| 3296049 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.67 | 54.0 | 3.65e-01 | 98.1% | 32.6% |
| 3573611 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 35.0 | 4.40e-01 | 100.0% | 100.0% |
| 3983134 | 223.1.1.113 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 | 0.58 | 42.0 | 3.53e-01 | 82.7% | 58.0% |
| 4008034 | 223.1.1.113 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 | 0.57 | 42.0 | 3.04e-01 | 82.7% | 34.1% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.57 | 44.0 | 4.56e-01 | 84.6% | 94.0% |
| 3708288 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 33.0 | 3.89e-01 | 100.0% | 85.7% |
| 4948028 | 284.1.1.32 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF | 0.57 | 46.0 | 3.88e-01 | 100.0% | 83.8% |
| 3320955 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.57 | 45.0 | 4.23e-01 | 86.5% | 75.4% |
| 5058275 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.57 | 46.0 | 3.60e-01 | 100.0% | 72.6% |
| 4933882 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.57 | 47.0 | 3.89e-01 | 100.0% | 88.6% |
| 2760149 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.56 | 47.0 | 3.88e-01 | 96.2% | 52.2% |
| 3452845 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.56 | 43.0 | 4.28e-01 | 84.6% | 85.5% |
| 5036380 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.56 | 45.0 | 3.84e-01 | 100.0% | 90.0% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.56 | 42.0 | 4.48e-01 | 96.2% | 93.3% |
| 3337080 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.55 | 44.0 | 4.26e-01 | 88.5% | 85.0% |
| 3514790 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.55 | 42.0 | 4.18e-01 | 98.1% | 78.2% |
| 4986404 | 4008.1.1.0 ↗ | 0.55 | 39.0 | 3.96e-01 | 92.3% | 80.0% | |
| 3223367 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 45.0 | 4.28e-01 | 100.0% | 92.3% |
| 3583377 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.52 | 35.0 | 3.26e-01 | 90.4% | 55.4% |
| 4507341 | 3675.1.1.0 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain | 0.51 | 36.0 | 2.65e-01 | 75.0% | 46.5% |
| 4943757 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 45.0 | 4.15e-01 | 98.1% | 80.0% |
D2
medium
residues 1-115
Domain cluster:
rep: putative_HNH_endonuclease__YP_009052174__Aureococcus_anophagefferens_virus__1474867__D31-119
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ic9A03 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 31.0 | 3.10e-01 | 89.6% | 52.5% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.52 | 27.0 | 2.36e-01 | 84.3% | 31.0% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.51 | 26.0 | 3.11e-01 | 94.8% | 73.2% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 23.0 | 3.35e-01 | 88.7% | 100.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3573585 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.71 | 29.0 | 4.01e-01 | 93.0% | 75.9% |
| 4609923 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.51 | 29.0 | 2.79e-01 | 82.6% | 45.2% |
| 3929340 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.50 | 30.0 | 2.77e-01 | 87.8% | 45.5% |
D3
medium
residues 116-184
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 37.1 | 2.60e-09 | 43.5% | 60.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.72 | 50.0 | 4.70e-01 | 72.5% | 60.2% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.65 | 54.0 | 4.07e-01 | 98.6% | 38.3% |
| 5e5nA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.59 | 37.0 | 3.34e-01 | 91.3% | 43.9% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.59 | 44.0 | 3.46e-01 | 79.7% | 43.0% |
| 5ly3A02 | 3.30.420.570 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 38.0 | 2.69e-01 | 71.0% | 68.8% |
| 1o5yA00 | 3.10.690.10 | Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain | 0.53 | 43.0 | 3.45e-01 | 91.3% | 70.6% |
| 6todA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 41.0 | 2.75e-01 | 92.8% | 58.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.65 | 50.0 | 4.89e-01 | 85.5% | 76.0% |
| 3695527 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.64 | 49.0 | 3.98e-01 | 92.8% | 45.8% |
| None | — | 0.62 | 52.0 | 4.09e-01 | 92.8% | 67.6% | |
| 5053631 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.62 | 45.0 | 3.79e-01 | 92.8% | 47.3% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.61 | 50.0 | 4.35e-01 | 92.8% | 73.4% |
| 4966035 | 376.1.3.98 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 | 0.56 | 36.0 | 3.80e-01 | 94.2% | 75.0% |
| 3280874 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 42.0 | 2.75e-01 | 87.0% | 70.3% |
| 4313859 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.52 | 40.0 | 3.07e-01 | 88.4% | 40.0% |
| 3997366 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.51 | 39.0 | 2.78e-01 | 87.0% | 69.0% |
| 3942711 | 10.12.1.104 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 | 0.51 | 35.0 | 2.74e-01 | 72.5% | 77.4% |