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ON637770.1__URP22126.1__SEA_BIG4_42__00042

Bact-Vir

ON637770.1__URP22126.1__SEA_BIG4_42__00042

Identity

Accession:
ON637770 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-82
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 55.0 5.20e-01 100.0% 63.6%
1c02A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.76 68.0 5.05e-01 100.0% 79.5%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.72 50.0 3.84e-01 100.0% 32.9%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.70 57.0 5.61e-01 100.0% 82.9%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 51.0 3.90e-01 79.1% 42.4%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 53.0 4.91e-01 82.1% 94.0%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.68 45.0 3.64e-01 97.0% 35.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.67 49.0 4.75e-01 79.1% 93.3%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 4.75e-01 76.1% 95.8%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 4.84e-01 79.1% 94.5%
3iv0A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 56.0 3.44e-01 100.0% 37.1%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 54.0 4.75e-01 100.0% 62.6%
7ep1B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 55.0 3.71e-01 94.0% 37.2%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.63 41.0 4.62e-01 95.5% 95.7%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.63 52.0 3.94e-01 95.5% 88.6%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.63 46.0 3.52e-01 79.1% 41.1%
4biuE01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.62 52.0 4.53e-01 100.0% 62.2%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 52.0 3.63e-01 100.0% 36.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.61 54.0 4.85e-01 100.0% 71.1%
8gccA03 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.61 55.0 4.72e-01 100.0% 83.7%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 48.0 4.53e-01 88.1% 78.0%
3qx3A04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.59 48.0 4.21e-01 88.1% 69.0%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 44.0 4.16e-01 82.1% 83.5%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 3.74e-01 98.5% 42.1%
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 46.0 3.58e-01 89.6% 56.4%
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.58 51.0 4.06e-01 100.0% 71.5%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 51.0 4.15e-01 100.0% 77.3%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 51.0 4.20e-01 100.0% 85.1%
3q18A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 51.0 4.24e-01 100.0% 86.2%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 51.0 4.17e-01 100.0% 83.7%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 51.0 4.10e-01 100.0% 79.2%
4dbgB01 6.10.140.1100 Special › Helix non-globular › Helix Hairpins › 0.57 38.0 4.28e-01 80.6% 100.0%
3fhnA05 1.10.10.2270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E 0.56 39.0 3.97e-01 97.0% 74.6%
2d8dB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.56 46.0 4.26e-01 88.1% 83.1%
2vklA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.55 48.0 4.56e-01 94.0% 83.1%
3mesA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 48.0 3.12e-01 97.0% 56.8%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 38.0 3.48e-01 73.1% 81.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.54 49.0 4.33e-01 100.0% 92.7%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 47.0 4.70e-01 98.5% 92.6%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.51e-01 86.6% 100.0%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 45.0 4.35e-01 98.5% 83.3%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 37.0 3.61e-01 73.1% 90.4%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 42.0 4.12e-01 88.1% 83.3%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.52 41.0 3.91e-01 98.5% 71.6%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 35.0 3.48e-01 98.5% 66.7%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.51 46.0 4.16e-01 98.5% 91.0%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.51 41.0 3.78e-01 89.6% 67.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 44.0 4.18e-01 95.5% 83.5%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.51 45.0 4.04e-01 98.5% 95.7%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.51 39.0 3.95e-01 92.5% 89.2%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.51 44.0 3.99e-01 97.0% 72.4%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978907 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.76 68.0 6.14e-01 98.5% 90.0%
4255610 11.1.1.154 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.72 61.0 4.30e-01 95.5% 85.2%
3996406 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.69 52.0 5.20e-01 80.6% 90.0%
3823250 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 46.0 3.39e-01 70.1% 73.7%
4175971 604.3.1.43 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › FliX 0.67 52.0 4.67e-01 83.6% 75.6%
3458224 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 49.0 4.18e-01 79.1% 72.7%
3202268 603.1.1.181 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30927 0.66 54.0 4.58e-01 89.6% 88.1%
3388501 130.1.2.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.66 53.0 3.85e-01 100.0% 31.6%
5070580 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.66 37.0 3.99e-01 95.5% 64.4%
4968648 592.3.1.9 alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › Acyl-CoA_dh_1 0.65 51.0 4.68e-01 83.6% 75.3%
4976803 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 54.0 4.97e-01 97.0% 76.4%
3553833 5086.1.1.102 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp 0.63 53.0 3.95e-01 98.5% 95.8%
5046243 106.1.1.2 alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome 0.63 48.0 3.98e-01 82.1% 67.5%
3275510 109.4.1.271 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAN1_TPR 0.63 51.0 3.79e-01 89.6% 57.1%
3782456 109.24.1.2 alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_C 0.61 55.0 4.43e-01 100.0% 95.4%
3608116 5086.1.1.177 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF9 0.61 51.0 3.92e-01 100.0% 42.1%
5001078 633.2.1.0 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.61 41.0 3.75e-01 71.6% 60.0%
4025959 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.61 51.0 4.70e-01 95.5% 92.2%
3806548 109.4.1.1718 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.60 49.0 4.27e-01 89.6% 81.9%
3174383 109.24.1.2 alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_C 0.60 54.0 4.13e-01 100.0% 82.0%
5067071 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.60 48.0 4.94e-01 89.6% 95.4%
3222274 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.59 53.0 4.62e-01 100.0% 85.0%
3291561 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 48.0 4.64e-01 98.5% 78.7%
4653139 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.59 44.0 3.84e-01 83.6% 71.8%
3249906 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.59 51.0 4.77e-01 98.5% 98.8%
3690687 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.58 44.0 4.33e-01 83.6% 92.0%
55361 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.58 41.0 3.58e-01 77.6% 70.3%
3936293 198.1.1.3 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.57 50.0 4.44e-01 97.0% 84.2%
3706707 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.57 46.0 4.10e-01 88.1% 67.4%
5077788 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.21e-01 92.5% 77.6%
5043888 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 42.0 4.29e-01 89.6% 84.6%
4936146 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.56 40.0 4.38e-01 97.0% 92.7%
3999274 5086.1.1.102 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp 0.55 51.0 4.31e-01 100.0% 66.7%
5021927 101.1.1.550 alpha arrays › HTH › HTH › Three-helical HTH › DUF1016_N 0.54 48.0 3.96e-01 100.0% 68.0%
5067915 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 43.0 2.96e-01 89.6% 39.2%
3799750 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 43.0 3.08e-01 88.1% 76.0%
3876674 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 44.0 4.00e-01 92.5% 92.2%
3996898 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.53 46.0 3.36e-01 100.0% 80.5%
3890334 101.1.1.65 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.52 42.0 3.85e-01 92.5% 84.2%
3607327 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 38.0 3.95e-01 89.6% 90.0%
5082325 3705.1.1.3 alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.52 46.0 4.56e-01 98.5% 95.7%
3533053 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.51 41.0 3.51e-01 91.0% 100.0%
3932643 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.51 41.0 3.88e-01 100.0% 71.8%
3578362 101.1.1.4 alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.51 43.0 4.20e-01 94.0% 85.3%
3959888 3922.1.1.159 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PPE 0.50 45.0 3.76e-01 97.0% 80.0%