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ON637770.1__URP22333.1__SEA_BIG4_300__00249

Bact-Vir

ON637770.1__URP22333.1__SEA_BIG4_300__00249

Identity

Accession:
ON637770 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 52.0 4.79e-01 82.1% 100.0%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 60.0 5.01e-01 100.0% 77.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 59.0 4.31e-01 100.0% 91.6%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.69 56.0 5.18e-01 87.5% 88.6%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 53.0 5.05e-01 85.7% 98.5%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.68 55.0 5.22e-01 87.5% 94.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.67 57.0 5.01e-01 96.4% 98.8%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 53.0 5.16e-01 96.4% 82.3%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 48.0 4.06e-01 82.1% 84.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 49.0 4.77e-01 96.4% 74.2%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 53.0 4.04e-01 100.0% 45.4%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 52.0 3.37e-01 89.3% 63.8%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 44.0 3.24e-01 75.0% 27.5%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.63 51.0 4.99e-01 98.2% 82.5%
1cfyA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.62 50.0 3.97e-01 98.2% 44.4%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 50.0 3.92e-01 91.1% 54.6%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 50.0 3.89e-01 100.0% 40.3%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 52.0 3.59e-01 100.0% 38.4%
5ynrA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 48.0 3.84e-01 100.0% 41.3%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.59 45.0 3.22e-01 85.7% 44.9%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 43.0 4.00e-01 100.0% 59.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 49.0 4.28e-01 100.0% 89.4%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 47.0 3.79e-01 100.0% 42.6%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.59 47.0 3.19e-01 94.6% 39.1%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 45.0 3.65e-01 91.1% 54.5%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.58 49.0 3.71e-01 100.0% 45.6%
2pttB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.09e-01 100.0% 63.9%
2yeqA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.58 43.0 3.51e-01 82.1% 47.7%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.10e-01 100.0% 70.8%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 50.0 4.46e-01 100.0% 93.8%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 47.0 3.65e-01 100.0% 58.2%
1vlmA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 48.0 3.31e-01 98.2% 78.7%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.57 42.0 3.06e-01 85.7% 43.3%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.56 41.0 2.94e-01 78.6% 99.4%
2pbzA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 48.0 3.44e-01 100.0% 53.2%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 43.0 2.85e-01 100.0% 21.0%
3up6A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 3.49e-01 100.0% 57.8%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 3.29e-01 100.0% 39.3%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 38.0 3.20e-01 89.3% 37.3%
8alzB04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 41.0 3.37e-01 83.9% 52.7%
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 45.0 3.40e-01 98.2% 49.0%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.54 45.0 3.74e-01 100.0% 73.0%
5jp0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.17e-01 83.9% 53.2%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.53 41.0 3.30e-01 92.9% 69.2%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 42.0 3.90e-01 94.6% 77.6%
4aogA00 3.20.120.10 Alpha Beta › Alpha-Beta Barrel › hfbii hydrophobin › Hydrophobin 0.51 36.0 3.35e-01 78.6% 65.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.51 40.0 3.08e-01 100.0% 67.4%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 39.0 2.96e-01 83.9% 59.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.76 61.0 5.62e-01 85.7% 98.6%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.74 62.0 5.63e-01 100.0% 69.3%
4928824 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 62.0 5.17e-01 92.9% 93.7%
5040784 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.73 59.0 6.18e-01 85.7% 98.0%
4169399 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.70 54.0 4.78e-01 82.1% 98.7%
3923043 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.70 61.0 5.09e-01 100.0% 79.0%
5034652 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 54.0 5.09e-01 87.5% 97.1%
3289252 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 46.0 3.34e-01 75.0% 25.0%
4538961 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.67 50.0 4.49e-01 78.6% 100.0%
3966635 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 48.0 3.34e-01 75.0% 97.1%
4989530 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.67 49.0 3.63e-01 80.4% 98.1%
3665387 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.66 50.0 4.13e-01 92.9% 44.8%
4153244 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 49.0 4.60e-01 80.4% 98.6%
3235704 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.66 55.0 4.84e-01 98.2% 61.9%
3701144 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.66 52.0 4.48e-01 87.5% 74.4%
4881297 304.8.1.1 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.65 56.0 4.88e-01 98.2% 87.5%
4964337 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.65 53.0 5.35e-01 98.2% 92.7%
4243894 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.64 54.0 3.57e-01 98.2% 34.1%
3945340 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.64 58.0 4.20e-01 100.0% 50.7%
3275867 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.64 53.0 4.20e-01 100.0% 44.6%
5049182 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.64 54.0 3.60e-01 100.0% 29.2%
3312666 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 50.0 4.74e-01 91.1% 72.9%
3251163 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.62 43.0 3.73e-01 100.0% 45.6%
4996589 3662.1.1.4 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.62 42.0 3.32e-01 71.4% 43.3%
3205036 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.61 46.0 3.09e-01 96.4% 19.6%
3593279 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 46.0 3.00e-01 85.7% 57.0%
4300924 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.60 50.0 3.97e-01 92.9% 47.8%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 46.0 4.61e-01 89.3% 94.9%
4490981 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 49.0 3.97e-01 92.9% 50.0%
4648475 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 45.0 4.47e-01 87.5% 93.3%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 47.0 4.82e-01 98.2% 96.4%
3460588 207.1.1.35 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8,Island 0.59 46.0 2.98e-01 98.2% 17.6%
4942276 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 42.0 3.66e-01 89.3% 48.9%
3664975 207.1.1.323 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRRNT_2, LRR_6, LRR_8, Island 0.58 46.0 2.58e-01 98.2% 6.5%
3366423 6108.1.1.11 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N 0.58 50.0 2.85e-01 100.0% 8.7%
5012588 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 45.0 4.00e-01 85.7% 81.2%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 46.0 4.50e-01 94.6% 90.6%
3277936 11.1.1.213 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PhoD_N 0.57 43.0 3.44e-01 82.1% 45.2%
3484366 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.57 46.0 4.02e-01 100.0% 67.0%
3264069 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.57 45.0 4.44e-01 100.0% 83.3%
3349683 64.5.1.0 beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB 0.57 39.0 3.88e-01 73.2% 85.0%
3537190 2004.5.1.5 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Njmu-R1 0.57 39.0 2.97e-01 73.2% 37.2%
3266488 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.87e-01 73.2% 83.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 46.0 4.24e-01 94.6% 78.7%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.56 40.0 4.12e-01 89.3% 88.0%
5023452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.56 46.0 3.58e-01 100.0% 47.6%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 44.0 4.22e-01 94.6% 84.3%
3624307 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 42.0 3.47e-01 85.7% 67.3%
4962335 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.55 45.0 4.35e-01 100.0% 81.5%
4329174 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.55 37.0 2.77e-01 73.2% 24.1%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 44.0 4.41e-01 98.2% 94.8%
4530509 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.53 41.0 2.91e-01 83.9% 96.4%
3514199 11.1.1.187 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EFF-AFF 0.53 46.0 3.68e-01 100.0% 50.0%
3472961 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.07e-01 87.5% 56.0%
4938061 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.67e-01 100.0% 52.7%
3169052 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.52 44.0 2.62e-01 100.0% 19.6%
3312745 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 2.90e-01 83.9% 56.9%
3701530 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 3.61e-01 100.0% 55.5%
3472406 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.51 45.0 2.82e-01 100.0% 25.0%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 43.0 2.94e-01 96.4% 31.1%
4030210 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.21e-01 100.0% 36.1%
3248068 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.50 40.0 3.70e-01 100.0% 67.5%
4217014 2007.1.3.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6 0.50 40.0 2.81e-01 92.9% 97.6%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.50 43.0 3.44e-01 100.0% 90.0%