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ON645346.1__UUG70013.1__SEA_ZUCKER_54__00054

Bact-Vir

ON645346.1__UUG70013.1__SEA_ZUCKER_54__00054

Identity

Accession:
ON645346 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-81
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.75 66.0 4.75e-01 100.0% 48.8%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.68 51.0 4.34e-01 80.6% 92.4%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 53.0 4.08e-01 86.1% 85.1%
4kg0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.66 58.0 4.57e-01 98.6% 89.5%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.65 58.0 4.86e-01 100.0% 82.3%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 49.0 4.02e-01 80.6% 78.5%
2b1xA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 50.0 4.14e-01 81.9% 91.3%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 57.0 4.08e-01 100.0% 81.3%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 48.0 3.94e-01 80.6% 81.0%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 46.0 4.00e-01 75.0% 98.2%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 56.0 4.65e-01 100.0% 55.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 44.0 4.20e-01 73.6% 100.0%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 46.0 4.04e-01 77.8% 98.1%
4u3qB00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.63 48.0 4.36e-01 83.3% 93.9%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 52.0 4.95e-01 100.0% 95.7%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.99e-01 91.7% 93.2%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 35.0 2.88e-01 100.0% 30.3%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.62 43.0 4.74e-01 87.5% 98.1%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 4.07e-01 100.0% 63.6%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.61 45.0 3.98e-01 80.6% 93.6%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 4.01e-01 100.0% 64.4%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 42.0 3.61e-01 73.6% 93.0%
2e63A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.59 50.0 3.88e-01 97.2% 85.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.60e-01 90.3% 89.4%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 40.0 2.89e-01 72.2% 97.3%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 4.02e-01 86.1% 95.3%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 40.0 4.07e-01 72.2% 100.0%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 43.0 2.73e-01 79.2% 87.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 43.0 2.98e-01 81.9% 42.6%
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 48.0 3.34e-01 93.1% 58.9%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.56 46.0 3.05e-01 91.7% 84.7%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 43.0 2.89e-01 86.1% 90.7%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 41.0 2.66e-01 79.2% 95.6%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 39.0 2.56e-01 75.0% 62.7%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.54 39.0 3.62e-01 77.8% 66.0%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 40.0 3.02e-01 81.9% 49.2%
6qm7M00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 43.0 3.15e-01 88.9% 86.9%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.54 38.0 3.21e-01 73.6% 95.8%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 37.0 2.55e-01 73.6% 69.5%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 39.0 3.15e-01 79.2% 72.9%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 37.0 3.44e-01 73.6% 59.3%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 2.92e-01 93.1% 73.1%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 37.0 3.45e-01 76.4% 96.8%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.52 40.0 3.28e-01 80.6% 77.0%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.23e-01 100.0% 85.8%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 41.0 2.75e-01 88.9% 37.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 4.01e-01 95.8% 82.4%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.90e-01 93.1% 90.5%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 38.0 2.67e-01 80.6% 42.4%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 2.94e-01 95.8% 87.6%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 37.0 3.22e-01 79.2% 84.9%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.50 37.0 4.07e-01 79.2% 100.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703423 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 59.0 4.78e-01 94.4% 82.2%
3220742 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.69 48.0 3.61e-01 73.6% 71.4%
3927589 10.1.1.23 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized 0.68 62.0 4.63e-01 98.6% 81.8%
5055984 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 59.0 4.82e-01 98.6% 54.1%
3279448 9.1.1.17 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.67 52.0 4.19e-01 81.9% 80.5%
4547005 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.67 51.0 4.05e-01 81.9% 77.3%
5009719 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.67 50.0 3.99e-01 80.6% 78.6%
3961067 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.66 50.0 4.15e-01 81.9% 85.4%
141833 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.66 45.0 4.26e-01 70.8% 98.8%
3539509 219.1.1.54 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.66 58.0 3.91e-01 100.0% 26.8%
224808 11.1.1.194 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM9_2 0.65 57.0 4.08e-01 100.0% 81.3%
3621408 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.64 44.0 2.82e-01 70.8% 54.8%
3958009 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.64 48.0 3.83e-01 80.6% 79.3%
4324611 2008.1.1.166 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XcyI 0.63 46.0 2.98e-01 76.4% 43.8%
2643433 5.1.3.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.63 45.0 2.92e-01 75.0% 78.9%
4008807 223.1.1.52 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE9 0.63 55.0 3.82e-01 100.0% 52.7%
3582941 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 46.0 4.09e-01 77.8% 93.0%
1100 10.1.1.32 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.62 55.0 4.01e-01 100.0% 60.4%
4888405 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.62 45.0 3.78e-01 94.4% 46.6%
3958695 3484.1.1.2 a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.62 49.0 3.86e-01 87.5% 58.1%
4609923 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.61 41.0 3.37e-01 77.8% 37.0%
4349950 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 35.0 3.83e-01 73.6% 68.3%
5016556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.46e-01 86.1% 88.9%
4031252 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 41.0 3.72e-01 72.2% 53.7%
4355548 558.1.1.26 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.60 42.0 2.57e-01 73.6% 59.1%
4120506 243.11.1.4 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.60 42.0 4.08e-01 73.6% 73.8%
169882 10.1.1.32 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.60 53.0 3.93e-01 100.0% 64.6%
3924073 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.78e-01 75.0% 78.1%
3938949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 3.75e-01 100.0% 68.6%
4119875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 33.0 3.52e-01 73.6% 61.5%
4408024 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.58 33.0 3.60e-01 73.6% 66.7%
3963450 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 45.0 3.75e-01 97.2% 46.7%
4116921 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.57 40.0 4.27e-01 91.7% 90.0%
3914794 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 49.0 3.62e-01 100.0% 75.6%
3578232 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.56 43.0 3.10e-01 91.7% 26.7%
3405742 11.1.1.596 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR-1-like_5th 0.56 48.0 3.77e-01 100.0% 70.6%
3616330 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.56 41.0 3.37e-01 86.1% 41.5%
4992059 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.56 42.0 3.57e-01 80.6% 80.5%
4980648 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.56e-01 90.3% 92.9%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 43.0 4.39e-01 90.3% 88.6%
3595473 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 38.0 2.72e-01 70.8% 48.6%
3257279 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 2.67e-01 88.9% 58.1%
3706524 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.55 41.0 2.74e-01 79.2% 98.3%
3743052 5.1.4.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.55 44.0 2.72e-01 87.5% 94.4%
4026678 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.55 42.0 4.31e-01 91.7% 88.6%
3878170 5.1.4.549 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28327 0.54 43.0 2.84e-01 88.9% 97.2%
4331473 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.53 39.0 3.90e-01 91.7% 76.2%
4946613 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.53 41.0 3.05e-01 86.1% 72.5%
3964846 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.53 38.0 3.68e-01 87.5% 67.1%
3887495 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 40.0 3.43e-01 81.9% 53.9%
3226306 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 43.0 3.78e-01 94.4% 65.2%
4967397 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 40.0 4.13e-01 87.5% 93.8%
4151176 5.1.4.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sortilin-Vps10 0.52 42.0 2.77e-01 90.3% 43.0%
4636538 3264.1.1.0 0.52 39.0 3.10e-01 83.3% 49.4%
3455400 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.52 42.0 2.79e-01 90.3% 85.7%
3193266 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 38.0 3.16e-01 81.9% 84.1%
3963760 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.52 40.0 3.29e-01 100.0% 44.1%
3839509 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.52 43.0 3.26e-01 98.6% 66.7%
3282813 268.1.1.0 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.51 41.0 4.00e-01 87.5% 90.0%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.51 38.0 3.90e-01 93.1% 93.8%
4104221 5.1.7.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 0.51 40.0 2.49e-01 90.3% 30.0%
3558235 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.50 37.0 3.11e-01 80.6% 86.7%
3212890 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 43.0 2.98e-01 100.0% 26.7%
5054141 2.14.1.0 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.50 33.0 3.73e-01 73.6% 98.0%
3815957 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.50 41.0 2.74e-01 93.1% 97.8%
4579655 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.50 40.0 2.52e-01 90.3% 95.2%