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UVF62240.1

Arc-Vir

ON649698__UVF62240.1__X__00036

Identity

Accession:
ON649698 ↗
Protein ID:
UVF62240.1 ↗
Kingdom:
archaea

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Juravirales› Yanlukaviridae› Sweetvirus› Nitrososphaeria_virus_YSH_1032793

TaxID: 3071320

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-103
PDB
Domain cluster: rep: BK061590.1__DBA08902.1__X__00021__D6-44_62-100
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.69 37.0 4.49e-01 93.9% 80.0%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.64 45.0 3.90e-01 72.4% 49.7%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.64 39.0 4.35e-01 99.0% 77.2%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.63 44.0 4.33e-01 71.4% 74.8%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 44.0 4.30e-01 74.5% 69.2%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.60 36.0 3.59e-01 88.8% 57.4%
3dyjA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.60 47.0 3.99e-01 85.7% 94.0%
2jifA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 42.0 3.63e-01 74.5% 55.2%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.58 44.0 4.45e-01 80.6% 98.0%
3a7kB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 42.0 3.13e-01 82.7% 29.5%
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.57 39.0 3.44e-01 71.4% 91.1%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 42.0 3.75e-01 77.6% 59.4%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.57 51.0 4.26e-01 95.9% 65.4%
2hkvA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.57 39.0 3.44e-01 70.4% 83.7%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.56 37.0 4.01e-01 74.5% 82.5%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 42.0 3.98e-01 78.6% 69.0%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 43.0 3.78e-01 83.7% 80.5%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 40.0 3.61e-01 78.6% 57.2%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.55 40.0 3.78e-01 82.7% 61.8%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 32.0 2.62e-01 70.4% 29.7%
3zojA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.53 47.0 3.51e-01 100.0% 74.9%
7b00A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.53 45.0 2.92e-01 92.9% 71.1%
1k92A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.53 41.0 3.20e-01 82.7% 83.7%
7eq1R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 41.0 2.95e-01 83.7% 46.4%
7vtgA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 44.0 3.21e-01 94.9% 82.7%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 40.0 3.14e-01 86.7% 40.3%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 35.0 3.58e-01 79.6% 71.6%
1b8dA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.51 41.0 3.51e-01 89.8% 77.4%
1irxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 42.0 3.32e-01 94.9% 62.1%
2qhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 43.0 3.16e-01 96.9% 85.8%
4f0uA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.50 41.0 3.57e-01 91.8% 80.6%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 41.0 4.12e-01 89.8% 93.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928042 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.77 62.0 6.49e-01 86.7% 98.9%
4444896 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.68 41.0 4.08e-01 74.5% 56.2%
4968618 611.6.1.0 ↗ alpha bundles › N-cbl like › PT26-6P helical domain › PT26-6P helical domain 0.64 48.0 4.80e-01 78.6% 77.6%
3829132 604.3.1.35 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF6857 0.63 43.0 3.79e-01 70.4% 75.2%
3647788 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.62 44.0 4.46e-01 74.5% 74.7%
5062538 3447.1.1.4 ↗ alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › PEMT 0.62 50.0 4.32e-01 87.8% 70.3%
3290133 2498.1.1.38 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zincin_2 0.61 53.0 3.78e-01 94.9% 49.8%
5069723 1076.1.1.0 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.61 53.0 4.23e-01 100.0% 76.7%
4158788 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.59 39.0 4.25e-01 74.5% 84.4%
3729123 5059.1.1.40 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › SLC35F, DUF3955 0.59 46.0 3.17e-01 82.7% 64.4%
3867093 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.57 41.0 3.94e-01 75.5% 69.6%
4566192 3277.1.1.1 ↗ alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › Thymine dioxygenase JBP1 DNA-binding domain › Thymine dioxygenase JBP1 DNA-binding domain › DB_JBP1 0.57 51.0 4.13e-01 95.9% 58.9%
4561985 139.2.1.1 ↗ few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif › Cytochrom_C552 0.56 48.0 3.09e-01 95.9% 41.6%
4951822 2005.1.1.124 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DALR_1 0.56 49.0 3.09e-01 100.0% 91.7%
4534597 139.2.1.1 ↗ few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif › Cytochrom_C552 0.55 47.0 3.10e-01 95.9% 42.0%
3767 601.26.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like › DUF1798 0.55 41.0 3.83e-01 82.7% 62.6%
4282296 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.55 34.0 3.18e-01 76.5% 50.0%
4028266 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.54 49.0 3.20e-01 98.0% 92.4%
3988973 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.54 43.0 4.06e-01 85.7% 71.7%
3397964 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.54 48.0 3.15e-01 99.0% 93.8%
None — 0.53 49.0 3.15e-01 100.0% 44.8%
4905644 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.41e-01 87.8% 48.3%
3488482 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.53 41.0 3.42e-01 81.6% 66.1%
4002622 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.52 43.0 4.27e-01 87.8% 87.6%
5049575 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 38.0 2.74e-01 79.6% 72.1%
3917547 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.52 44.0 3.17e-01 100.0% 36.4%
4002047 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 45.0 3.07e-01 99.0% 95.3%
3387189 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 45.0 3.23e-01 98.0% 74.5%
4997271 1188.1.1.1 ↗ alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.51 45.0 3.40e-01 100.0% 94.4%
3188552 5051.1.1.9 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur 0.51 43.0 2.77e-01 94.9% 62.5%
4565740 5050.1.1.33 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_5 0.51 41.0 3.09e-01 87.8% 42.1%
3540024 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.50 40.0 2.87e-01 84.7% 93.9%