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UVF62311.1

Arc-Vir

ON649699__UVF62311.1__X__00039

Identity

Accession:
ON649699 ↗
Protein ID:
UVF62311.1 ↗
Kingdom:
archaea

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Juravirales› Yangangviridae› Nohelivirus› Nitrososphaeria_virus_YSH_462411

TaxID: 3071321

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 53.0 3.35e-01 88.0% 17.9%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.68 50.0 4.93e-01 82.0% 78.2%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.66 50.0 4.38e-01 84.0% 57.1%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 50.0 3.87e-01 86.0% 38.7%
4efoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 49.0 4.18e-01 88.0% 51.7%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 50.0 3.80e-01 90.0% 37.5%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 42.0 4.63e-01 84.0% 92.3%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 41.0 2.89e-01 70.0% 77.5%
7bi2A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 45.0 3.62e-01 84.0% 73.8%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 47.0 3.41e-01 92.0% 51.2%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.59 43.0 2.84e-01 82.0% 42.3%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 3.79e-01 90.0% 57.0%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.57 44.0 4.26e-01 92.0% 95.0%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.56 41.0 2.96e-01 82.0% 28.7%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 41.0 3.35e-01 76.0% 75.0%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.56 40.0 3.13e-01 78.0% 73.5%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 2.95e-01 84.0% 55.0%
3obaA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 36.0 2.25e-01 70.0% 82.4%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 39.0 2.94e-01 84.0% 41.4%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 40.0 2.48e-01 94.0% 41.1%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 38.0 2.57e-01 86.0% 52.0%
3lltA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 41.0 2.68e-01 88.0% 62.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.35e-01 84.0% 61.4%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.50 35.0 2.45e-01 80.0% 38.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3702075 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.87 67.0 6.75e-01 90.0% 82.0%
3604593 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 57.0 5.54e-01 80.0% 76.4%
3414868 375.3.1.1 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL 0.75 57.0 4.82e-01 86.0% 49.4%
3447963 375.3.1.0 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.73 52.0 4.85e-01 86.0% 60.0%
5065792 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.73 63.0 4.49e-01 100.0% 32.3%
5061487 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.67 57.0 4.21e-01 100.0% 59.4%
3394277 221.1.1.168 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B 0.66 54.0 3.40e-01 94.0% 32.6%
5051542 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 53.0 3.60e-01 92.0% 24.7%
3730501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.98e-01 88.0% 88.9%
3897370 3346.1.1.5 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.63 52.0 3.56e-01 98.0% 94.1%
2833617 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 48.0 4.49e-01 90.0% 66.7%
5034902 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 51.0 3.80e-01 100.0% 59.3%
3533135 2492.1.1.36 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.61 50.0 3.34e-01 96.0% 47.4%
3702726 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 47.0 3.92e-01 88.0% 47.8%
3504586 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 50.0 3.62e-01 100.0% 56.1%
3305241 2003.1.5.153 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.58 39.0 2.67e-01 70.0% 21.1%
3276244 3346.1.1.0 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 0.58 47.0 3.38e-01 96.0% 81.2%
4539323 4099.1.1.32 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 0.57 38.0 3.05e-01 84.0% 32.4%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.26e-01 84.0% 36.4%
3710894 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 42.0 4.10e-01 88.0% 77.6%
4383453 4099.1.1.32 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 0.54 36.0 2.67e-01 84.0% 24.1%
4642235 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.54 41.0 2.53e-01 90.0% 68.4%
3066252 4032.1.1.1 ↗ beta complex topology › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › Flagellin_IN 0.54 38.0 3.14e-01 82.0% 38.2%
4996628 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 42.0 2.94e-01 100.0% 35.3%