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UVF62312.1

Arc-Vir

ON649699__UVF62312.1__X__00040

Identity

Accession:
ON649699 ↗
Protein ID:
UVF62312.1 ↗
Kingdom:
archaea

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Juravirales› Yangangviridae› Nohelivirus› Nitrososphaeria_virus_YSH_462411

TaxID: 3071321

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-31
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cwvA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.73 52.0 3.77e-01 80.6% 25.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.71 50.0 3.38e-01 80.6% 18.2%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.71 51.0 5.07e-01 100.0% 78.8%
1wmvA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.71 49.0 4.86e-01 77.4% 100.0%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.69 48.0 4.68e-01 80.6% 61.5%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.69 51.0 3.77e-01 100.0% 29.7%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 57.0 3.62e-01 100.0% 34.0%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.67 49.0 3.52e-01 93.5% 85.5%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.67 48.0 4.22e-01 100.0% 49.1%
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 47.0 4.60e-01 100.0% 71.1%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 45.0 4.55e-01 100.0% 75.8%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 46.0 4.39e-01 100.0% 60.5%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.64 48.0 4.36e-01 100.0% 75.0%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 51.0 3.51e-01 100.0% 56.3%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 44.0 3.26e-01 100.0% 25.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.18e-01 100.0% 63.5%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 44.0 4.48e-01 100.0% 86.7%
3g7qA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.60 47.0 2.87e-01 93.5% 27.2%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.37e-01 93.5% 33.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.13e-01 100.0% 78.7%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.57 40.0 2.69e-01 77.4% 15.9%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.57 40.0 3.39e-01 100.0% 40.0%
4r2xD00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 41.0 2.56e-01 100.0% 12.0%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.56 40.0 3.96e-01 90.3% 82.1%
2js3A01 1.10.287.780 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains 0.56 40.0 3.33e-01 90.3% 39.5%
4nozB01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 40.0 3.55e-01 80.6% 42.6%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.29e-01 100.0% 38.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 43.0 3.89e-01 100.0% 63.5%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 39.0 2.35e-01 100.0% 41.2%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.51 36.0 2.13e-01 100.0% 16.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230560 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 72.0 7.05e-01 100.0% 88.6%
4944150 377.2.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins 0.81 68.0 6.65e-01 100.0% 94.3%
3400923 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.78 57.0 4.59e-01 80.6% 43.3%
4219366 4071.1.1.1 ↗ beta barrels › BH3618-like › BH3618-like › BH3618-like › FliW 0.78 64.0 4.30e-01 100.0% 28.1%
3354326 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.76 57.0 4.73e-01 100.0% 45.0%
3732527 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 59.0 5.88e-01 100.0% 94.3%
3938955 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 59.0 5.50e-01 100.0% 71.1%
3200628 64.1.1.15 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_2 0.73 56.0 5.47e-01 90.3% 85.7%
3425088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 54.0 4.52e-01 96.8% 70.8%
5030309 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 53.0 5.33e-01 100.0% 91.4%
4984918 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.71 56.0 5.55e-01 100.0% 94.3%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.71 57.0 4.76e-01 100.0% 52.7%
5072324 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.70 55.0 3.96e-01 93.5% 47.4%
4999716 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 5.43e-01 100.0% 91.4%
3404953 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 50.0 4.73e-01 80.6% 62.5%
5032251 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 52.0 4.89e-01 100.0% 71.1%
4985708 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 52.0 4.91e-01 100.0% 71.1%
3649933 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.67 47.0 4.07e-01 77.4% 44.0%
3960458 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.66 52.0 3.35e-01 96.8% 31.4%
4889754 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.65 48.0 4.06e-01 87.1% 45.0%
3955489 2484.1.1.211 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.63 51.0 3.16e-01 100.0% 16.7%
4562142 136.1.1.1 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.62 49.0 2.81e-01 100.0% 8.6%
5028956 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.61 46.0 4.56e-01 96.8% 85.7%
5070745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 3.99e-01 100.0% 62.2%
1140051 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 44.0 4.08e-01 100.0% 75.5%
4855767 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.53 37.0 3.68e-01 83.9% 96.3%