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UVF62353.1

Arc-Vir

ON649700__UVF62353.1__X__00008

Identity

Accession:
ON649700 ↗
Protein ID:
UVF62353.1 ↗
Kingdom:
archaea

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Juravirales› Yangangviridae› Senitvirus› Nitrososphaeria_virus_YSH_174770

TaxID: 3071322

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-75
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 5.12e-01 70.6% 89.3%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.23e-01 100.0% 71.4%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.38e-01 77.9% 78.0%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.65 56.0 5.22e-01 100.0% 80.9%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.65 54.0 4.32e-01 94.1% 60.0%
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.63 55.0 4.91e-01 100.0% 93.0%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.62 46.0 4.29e-01 80.9% 75.0%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 49.0 3.22e-01 89.7% 29.8%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 41.0 3.78e-01 70.6% 86.7%
3vsjA00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.59 50.0 3.38e-01 95.6% 75.9%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.07e-01 89.7% 80.0%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 51.0 4.09e-01 98.5% 62.9%
3he0B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 43.0 3.25e-01 79.4% 56.2%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.59 37.0 3.61e-01 82.4% 56.6%
3crmA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 3.88e-01 95.6% 59.9%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 45.0 4.06e-01 85.3% 76.5%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 43.0 3.59e-01 79.4% 89.4%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 48.0 4.26e-01 94.1% 81.6%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.57 48.0 3.53e-01 97.1% 37.3%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 46.0 3.57e-01 92.6% 47.7%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 47.0 4.24e-01 97.1% 74.2%
4w7sA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.45e-01 95.6% 69.9%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 47.0 4.30e-01 98.5% 77.7%
1wvuA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 43.0 3.49e-01 89.7% 91.9%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 45.0 3.91e-01 95.6% 63.2%
3m03B00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 47.0 4.25e-01 97.1% 83.2%
8kcaB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.48e-01 95.6% 74.3%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.82e-01 88.2% 86.5%
7r0kB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 46.0 3.15e-01 95.6% 69.4%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 45.0 4.02e-01 98.5% 68.9%
2qiwA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 45.0 3.23e-01 100.0% 41.1%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.54 46.0 3.70e-01 100.0% 63.6%
2afaA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 46.0 2.89e-01 100.0% 97.5%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 45.0 4.09e-01 98.5% 79.8%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 39.0 3.94e-01 80.9% 87.3%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.53 43.0 3.88e-01 94.1% 100.0%
2vklA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.52 37.0 3.63e-01 76.5% 77.9%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.63e-01 79.4% 86.9%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.40e-01 79.4% 78.1%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 36.0 2.95e-01 89.7% 39.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238440 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.73 51.0 5.28e-01 73.5% 96.9%
5082325 3705.1.1.3 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.72 50.0 5.01e-01 72.1% 90.0%
5027755 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 51.0 4.87e-01 76.5% 76.2%
4567935 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 47.0 4.82e-01 72.1% 93.8%
4931635 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.68 52.0 4.89e-01 82.4% 83.3%
3731178 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.67 56.0 4.79e-01 97.1% 90.4%
2684 101.1.2.221 ↗ alpha arrays › HTH › HTH › winged helix domain › ArnR1-like_WHD 0.66 48.0 4.37e-01 77.9% 77.2%
3577412 5054.1.1.83 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Tcp11 0.65 44.0 3.28e-01 70.6% 41.1%
4969698 101.1.1.544 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.63 51.0 4.99e-01 88.2% 93.3%
3972357 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.63 47.0 3.64e-01 80.9% 38.4%
3621803 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.62 50.0 4.92e-01 91.2% 88.0%
3922168 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.62 45.0 4.49e-01 77.9% 84.3%
4991128 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 53.0 4.80e-01 98.5% 82.1%
3409412 101.1.10.19 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd 0.60 53.0 4.77e-01 98.5% 82.1%
3830022 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 52.0 4.49e-01 98.5% 65.5%
1879330 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 52.0 4.72e-01 97.1% 79.1%
3374895 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.59 50.0 4.06e-01 97.1% 55.6%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 50.0 4.26e-01 97.1% 61.7%
3816829 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 49.0 3.83e-01 97.1% 49.4%
3194347 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 50.0 3.86e-01 97.1% 46.5%
3767388 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 48.0 4.00e-01 94.1% 65.6%
4942111 301.2.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.58 48.0 3.56e-01 95.6% 43.2%
5073004 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 49.0 3.99e-01 95.6% 60.0%
5067100 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 49.0 4.59e-01 97.1% 81.2%
4943136 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 49.0 4.50e-01 97.1% 80.0%
5042605 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 49.0 4.44e-01 97.1% 77.4%
3174945 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 45.0 3.43e-01 88.2% 38.2%
4927466 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 48.0 4.45e-01 97.1% 80.0%
5025139 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 49.0 4.42e-01 98.5% 76.8%
5025138 101.1.10.80 ↗ alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF 0.56 48.0 3.47e-01 97.1% 38.5%
5058138 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.56 43.0 3.61e-01 85.3% 76.0%
4956629 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 4.11e-01 97.1% 65.5%
4969273 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 4.24e-01 97.1% 72.4%
4794558 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 4.45e-01 97.1% 90.7%
4956628 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 3.82e-01 97.1% 56.4%
4944102 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 48.0 4.43e-01 98.5% 81.1%
4929178 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 3.41e-01 97.1% 39.5%
4996071 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 4.35e-01 97.1% 80.0%
4947863 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 47.0 4.40e-01 98.5% 81.1%
4978149 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 4.26e-01 97.1% 75.8%
5000678 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 47.0 4.22e-01 97.1% 78.0%
5037673 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.56 47.0 4.09e-01 97.1% 70.9%
5078302 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 45.0 4.07e-01 94.1% 71.0%
4962267 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 46.0 4.29e-01 97.1% 80.0%
3269341 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.55 47.0 4.32e-01 97.1% 90.0%
4290529 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.55 40.0 3.45e-01 77.9% 56.4%
185688 109.25.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.55 47.0 3.96e-01 97.1% 59.3%
4965872 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 48.0 4.26e-01 100.0% 78.0%
4378444 109.25.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.54 47.0 3.96e-01 100.0% 64.2%
4961655 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.54 46.0 4.18e-01 97.1% 75.8%
3965373 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.54 38.0 3.82e-01 73.5% 71.4%
3736572 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 46.0 3.79e-01 98.5% 57.8%
4947168 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 46.0 4.23e-01 98.5% 84.4%
3557467 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.53 43.0 4.00e-01 94.1% 91.1%
5064399 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 44.0 4.15e-01 97.1% 80.0%
4605138 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.53 37.0 3.17e-01 73.5% 51.3%
4634964 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.53 37.0 3.23e-01 73.5% 53.6%
3409435 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.53 44.0 4.00e-01 97.1% 85.3%
4130073 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.53 38.0 3.35e-01 77.9% 56.4%
3574922 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.84e-01 77.9% 93.8%
3289779 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.51 45.0 3.49e-01 100.0% 44.5%