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UVF62398.1

Arc-Vir

ON649700__UVF62398.1__X__00053

Identity

Accession:
ON649700 ↗
Protein ID:
UVF62398.1 ↗
Kingdom:
archaea

Quality

77.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Juravirales› Yangangviridae› Senitvirus› Nitrososphaeria_virus_YSH_174770

TaxID: 3071322

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-170
PDB
Domain cluster: rep: MN871446.1__UKS71963.1__KpLz245_0970__00097__D488-572
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25692.2 best Phage_depo_C 31.0 3.70e-07 96.8% 82.2%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.76 66.0 6.72e-01 100.0% 96.7%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 58.0 6.14e-01 94.7% 97.6%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 63.0 6.39e-01 100.0% 97.8%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 57.0 5.86e-01 100.0% 93.3%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.64 57.0 5.43e-01 100.0% 85.3%
1id2A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.62 46.0 4.43e-01 77.9% 78.3%
5oj2B05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.90e-01 97.9% 68.8%
3zr5A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 46.0 4.18e-01 97.9% 94.9%
4ccdA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 46.0 3.44e-01 97.9% 91.7%
1k3rA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 32.0 3.92e-01 87.4% 96.6%
4aeeA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 34.0 3.90e-01 91.6% 91.0%
3ty2A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.52 44.0 3.32e-01 94.7% 90.4%
1fwxA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 46.0 4.25e-01 97.9% 87.6%
7oo1A02 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 35.0 3.24e-01 70.5% 84.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581338 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.75 66.0 6.62e-01 100.0% 93.8%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.74 63.0 6.39e-01 100.0% 92.6%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.72 63.0 6.36e-01 100.0% 96.8%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 57.0 5.99e-01 100.0% 96.6%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.64 57.0 5.43e-01 100.0% 85.3%
3724907 12.6.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.53 41.0 4.29e-01 100.0% 91.8%
None — 0.53 40.0 3.81e-01 95.8% 67.8%
3891591 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 4.10e-01 93.7% 77.5%
3281086 207.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.50 39.0 3.39e-01 100.0% 53.3%
D2 high residues 317-365
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.79 63.0 4.82e-01 100.0% 38.6%
3fveA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.70 61.0 4.51e-01 100.0% 46.5%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 58.0 4.52e-01 100.0% 42.6%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 58.0 4.68e-01 100.0% 48.0%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.69 48.0 4.86e-01 79.6% 76.0%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 56.0 4.56e-01 100.0% 48.4%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.67 52.0 5.39e-01 98.0% 95.7%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.66 55.0 3.91e-01 100.0% 42.1%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.65 55.0 4.07e-01 100.0% 43.3%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 50.0 3.04e-01 85.7% 81.7%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 49.0 4.11e-01 89.8% 46.7%
5anpA00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.64 54.0 3.97e-01 100.0% 42.8%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 52.0 4.04e-01 100.0% 52.9%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 50.0 3.74e-01 100.0% 43.1%
4axhA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.61 49.0 3.66e-01 89.8% 37.5%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 47.0 3.94e-01 87.8% 52.2%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.61 49.0 3.70e-01 91.8% 39.5%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 47.0 3.69e-01 98.0% 47.7%
2ozgA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.58 45.0 3.76e-01 89.8% 48.9%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 3.85e-01 98.0% 87.3%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 3.39e-01 81.6% 61.4%
1uh9A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 42.0 3.27e-01 100.0% 70.5%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 3.48e-01 83.7% 84.9%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 41.0 3.60e-01 81.6% 84.9%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 46.0 3.18e-01 100.0% 28.1%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 47.0 3.68e-01 100.0% 61.3%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.73e-01 100.0% 75.6%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 44.0 3.94e-01 100.0% 68.4%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 44.0 3.09e-01 100.0% 82.2%
2itmB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 41.0 2.71e-01 91.8% 30.8%
1sgvA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 41.0 3.94e-01 100.0% 81.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.48e-01 91.8% 60.2%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 2.55e-01 100.0% 38.3%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 44.0 3.24e-01 100.0% 41.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3905730 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.77 62.0 4.73e-01 100.0% 38.3%
3506774 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.77 61.0 4.63e-01 100.0% 36.7%
3506772 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.77 62.0 4.60e-01 100.0% 35.2%
3517650 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.75 61.0 4.83e-01 100.0% 44.0%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.75 57.0 3.61e-01 100.0% 15.7%
3518947 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.74 59.0 4.48e-01 100.0% 36.7%
4993841 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.74 64.0 4.69e-01 100.0% 38.8%
3995595 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.74 61.0 4.45e-01 100.0% 34.1%
4994059 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.73 63.0 4.61e-01 100.0% 40.7%
5053690 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.72 62.0 4.42e-01 100.0% 36.4%
5070642 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.72 62.0 4.10e-01 100.0% 24.7%
5068304 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.72 62.0 4.43e-01 100.0% 35.3%
3477642 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 59.0 4.53e-01 100.0% 39.2%
3483784 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 60.0 4.79e-01 100.0% 45.7%
3890372 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 62.0 4.80e-01 100.0% 44.5%
3935342 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 59.0 4.51e-01 100.0% 40.0%
5038834 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.71 60.0 4.42e-01 100.0% 35.5%
5081359 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.71 60.0 4.19e-01 100.0% 31.2%
3768845 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.70 48.0 3.76e-01 81.6% 33.3%
3984362 1.1.9.32 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.70 58.0 4.81e-01 100.0% 58.9%
3477283 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 57.0 4.61e-01 100.0% 46.0%
3310464 375.1.1.69 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.70 52.0 5.20e-01 91.8% 80.0%
3854670 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 57.0 4.16e-01 100.0% 32.9%
4996288 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.70 60.0 4.43e-01 100.0% 40.0%
5074348 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.70 60.0 4.37e-01 100.0% 35.7%
3940997 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.69 50.0 3.63e-01 77.6% 36.3%
5049198 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.69 58.0 4.12e-01 100.0% 35.0%
3618546 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 57.0 4.37e-01 100.0% 40.0%
4052309 7528.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II 0.69 59.0 4.55e-01 100.0% 77.4%
3777778 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 58.0 3.69e-01 100.0% 18.8%
4656410 1.1.9.32 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.68 56.0 4.79e-01 100.0% 62.9%
4991801 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.68 55.0 4.26e-01 100.0% 38.4%
3167601 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.66 45.0 3.57e-01 100.0% 36.8%
3623273 101.1.2.712 ↗ alpha arrays › HTH › HTH › winged helix domain › FNIP_C 0.65 57.0 3.56e-01 100.0% 36.0%
5052070 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.65 54.0 4.43e-01 100.0% 78.0%
2491145 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.64 49.0 2.83e-01 83.7% 62.8%
3167972 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 49.0 2.65e-01 83.7% 38.3%
3256970 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 55.0 4.67e-01 100.0% 98.8%
3982093 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.64 50.0 3.64e-01 87.8% 35.7%
4631930 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.62 50.0 3.86e-01 100.0% 47.7%
4149106 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.62 52.0 3.89e-01 100.0% 46.7%
4033230 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.61 50.0 3.77e-01 100.0% 40.7%
4026577 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.61 37.0 3.65e-01 71.4% 50.9%
4937757 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.61 53.0 3.62e-01 98.0% 99.4%
5010105 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.60 49.0 3.83e-01 100.0% 50.4%
3927525 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.60 46.0 2.98e-01 89.8% 31.0%
3588252 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.59 46.0 4.22e-01 85.7% 67.7%
3574976 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 47.0 4.56e-01 98.0% 92.7%
3929586 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 39.0 3.93e-01 75.5% 76.0%
3471039 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 3.12e-01 100.0% 89.8%
2755815 372.2.1.2 ↗ a+b complex topology › RNase A-like › EndoU-like › EndoU-like › CoV_NSP15_C 0.55 42.0 3.19e-01 95.9% 97.5%
4287653 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.55 43.0 3.66e-01 91.8% 58.9%
4027092 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 45.0 3.59e-01 100.0% 80.0%
4028413 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.56e-01 95.9% 80.2%
3364812 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 2.93e-01 100.0% 35.7%
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 35.0 3.06e-01 75.5% 43.8%