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UVF62477.1

Arc-Vir

ON649701__UVF62477.1__X__00068

Identity

Accession:
ON649701 ↗
Protein ID:
UVF62477.1 ↗
Kingdom:
archaea

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Juravirales› Yangangviridae› Mathaucavirus› Nitrososphaeria_virus_YSH_922147

TaxID: 3071323

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-72
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.70 55.0 3.33e-01 85.3% 83.5%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 37.0 3.13e-01 76.5% 33.3%
1mzgB00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.63 54.0 4.24e-01 94.1% 62.2%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.63 52.0 4.10e-01 91.2% 48.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.61 50.0 4.63e-01 92.6% 75.8%
7k7yG02 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.61 53.0 3.34e-01 98.5% 76.2%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 44.0 3.15e-01 77.9% 75.0%
3b34A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.60 41.0 3.86e-01 92.6% 56.5%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 33.0 2.29e-01 79.4% 15.5%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.58 37.0 3.19e-01 95.6% 40.4%
2f7sA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 3.33e-01 85.3% 40.2%
4mfzA02 3.40.630.120 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.58 41.0 3.30e-01 98.5% 35.4%
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.57 47.0 3.48e-01 94.1% 90.0%
3iayA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 47.0 3.35e-01 92.6% 86.4%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 49.0 3.32e-01 100.0% 53.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 3.87e-01 89.7% 95.8%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.38e-01 86.8% 83.2%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.56 46.0 3.59e-01 94.1% 50.6%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 45.0 3.16e-01 89.7% 83.5%
3k6oA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.54 47.0 3.78e-01 100.0% 52.2%
1apyB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.54 44.0 3.56e-01 92.6% 73.8%
4gdxB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.54 43.0 3.27e-01 92.6% 89.4%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.53 40.0 3.72e-01 82.4% 78.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 46.0 4.23e-01 100.0% 97.8%
1y8qC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 2.64e-01 82.4% 39.2%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 42.0 3.92e-01 98.5% 69.2%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.20e-01 98.5% 50.0%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 38.0 2.85e-01 77.9% 87.9%
3g9kF01 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.52 41.0 3.20e-01 95.6% 38.0%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.11e-01 98.5% 79.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.50 38.0 3.83e-01 82.4% 90.1%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 38.0 2.71e-01 82.4% 88.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026943 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 54.0 4.01e-01 100.0% 31.5%
4034385 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.71 47.0 4.03e-01 92.6% 41.8%
1560725 3974.1.1.1 ↗ beta duplicates or obligate multimers › EBNA-2 N-terminal dimerization (END) domain › EBNA-2 N-terminal dimerization (END) domain › EBNA-2 N-terminal dimerization (END) domain › EBNA2_N 0.68 43.0 4.48e-01 92.6% 69.4%
4949578 3957.1.1.0 ↗ a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.64 45.0 4.81e-01 94.1% 85.0%
4027980 3156.3.1.2 ↗ beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 0.64 42.0 3.17e-01 100.0% 27.9%
4525886 109.4.1.1360 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p 0.63 58.0 3.34e-01 100.0% 23.7%
4955690 327.10.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.61 42.0 4.25e-01 98.5% 71.4%
3614862 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.60 52.0 3.49e-01 92.6% 33.9%
3204785 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.59 48.0 4.09e-01 89.7% 58.2%
4002132 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 51.0 3.24e-01 97.1% 39.7%
3333678 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 33.0 3.82e-01 75.0% 84.4%
4955569 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.57 49.0 3.61e-01 95.6% 77.1%
3955660 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 3.04e-01 88.2% 54.7%
3272379 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.56 45.0 4.20e-01 91.2% 75.3%
3003102 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.56 42.0 3.40e-01 80.9% 76.1%
3524281 210.1.6.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.56 45.0 3.26e-01 94.1% 75.6%
4489443 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 39.0 3.34e-01 73.5% 62.7%
1224463 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.55 35.0 3.84e-01 91.2% 85.7%
3466254 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 32.0 3.62e-01 98.5% 78.0%
3620592 6155.1.1.15 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.55 45.0 3.55e-01 89.7% 73.6%
4943515 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.54 44.0 3.04e-01 91.2% 27.3%
3961512 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.54 43.0 2.90e-01 86.8% 62.6%
4927364 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.54 40.0 3.93e-01 100.0% 76.7%
5050929 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.54 40.0 3.86e-01 77.9% 100.0%
3351840 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.54 34.0 3.42e-01 76.5% 62.3%
3798928 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.53 38.0 2.33e-01 76.5% 26.7%
3279656 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 38.0 3.18e-01 97.1% 44.2%
3682917 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 40.0 2.98e-01 88.2% 64.5%
3641356 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.52 33.0 3.22e-01 100.0% 58.7%
3577202 210.1.2.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH,NAAA-beta 0.51 42.0 2.96e-01 95.6% 56.3%
3517620 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 42.0 2.76e-01 100.0% 20.0%
4233683 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.51 41.0 3.02e-01 97.1% 50.5%
3216951 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.23e-01 89.7% 64.3%