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UVF62514.1

Arc-Vir

ON649702__UVF62514.1__X__00040

Identity

Accession:
ON649702 ↗
Protein ID:
UVF62514.1 ↗
Kingdom:
archaea

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-44
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 63.0 4.34e-01 100.0% 56.8%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.70 57.0 4.21e-01 100.0% 33.3%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.69 49.0 4.15e-01 97.4% 43.7%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.69 56.0 4.12e-01 100.0% 36.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 3.90e-01 100.0% 32.4%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.66 53.0 3.22e-01 100.0% 30.6%
1jpyX00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.66 50.0 3.63e-01 82.1% 27.4%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 50.0 3.15e-01 84.6% 16.5%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 3.65e-01 94.9% 29.2%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 52.0 3.21e-01 94.9% 40.5%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 52.0 3.92e-01 97.4% 34.3%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.65 52.0 4.28e-01 100.0% 54.8%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 47.0 3.26e-01 82.1% 26.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 3.82e-01 100.0% 64.5%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.57e-01 94.9% 74.4%
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 43.0 3.05e-01 71.8% 21.9%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.62 44.0 4.11e-01 94.9% 57.9%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 40.0 4.12e-01 74.4% 63.2%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.56e-01 94.9% 32.5%
4uxuA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.61 47.0 3.12e-01 100.0% 46.2%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 43.0 3.25e-01 97.4% 26.8%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 3.88e-01 100.0% 66.7%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.60 46.0 3.33e-01 89.7% 65.6%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 43.0 3.36e-01 84.6% 88.2%
2gk3A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 45.0 2.85e-01 89.7% 86.6%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.60 45.0 3.18e-01 97.4% 24.4%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.30e-01 100.0% 27.3%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.60 40.0 3.32e-01 89.7% 33.8%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 47.0 3.52e-01 92.3% 69.5%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.59 44.0 4.23e-01 100.0% 81.1%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.58 39.0 2.52e-01 87.2% 11.8%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 46.0 3.49e-01 100.0% 67.6%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.57 46.0 3.68e-01 100.0% 50.5%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 41.0 2.92e-01 97.4% 23.5%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 40.0 3.51e-01 97.4% 46.2%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.61e-01 92.3% 10.6%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.56 41.0 3.06e-01 94.9% 40.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.51e-01 97.4% 42.3%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 2.83e-01 89.7% 29.9%
2qagB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 2.50e-01 82.1% 19.5%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 45.0 3.12e-01 100.0% 83.3%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.54 38.0 3.61e-01 94.9% 55.8%
3dorA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 38.0 2.44e-01 84.6% 13.8%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.24e-01 84.6% 75.0%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 37.0 2.51e-01 74.4% 15.4%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 38.0 2.37e-01 94.9% 11.2%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.35e-01 100.0% 58.7%
3fmcC01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 43.0 2.65e-01 100.0% 24.1%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.52 39.0 2.83e-01 100.0% 54.0%
2z17A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 35.0 2.76e-01 74.4% 100.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 2.86e-01 89.7% 31.0%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 3.36e-01 97.4% 69.7%
3l4gC01 3.30.1370.240 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 34.0 2.64e-01 79.5% 25.7%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.10e-01 97.4% 62.6%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.50 37.0 3.55e-01 84.6% 70.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.77 63.0 5.37e-01 97.4% 55.4%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 62.0 3.58e-01 94.9% 11.6%
4995179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.73 60.0 4.76e-01 100.0% 43.5%
4453447 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.72 58.0 4.14e-01 100.0% 30.0%
3718119 2004.1.1.348 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B 0.71 56.0 3.68e-01 100.0% 20.6%
5031616 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.70 55.0 5.11e-01 100.0% 69.1%
3447043 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 49.0 5.09e-01 97.4% 88.6%
3710433 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 52.0 3.91e-01 97.4% 31.8%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.68 54.0 4.80e-01 97.4% 60.0%
5005105 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 50.0 3.89e-01 87.2% 35.6%
3503534 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.68 50.0 3.46e-01 84.6% 22.8%
3497397 395.1.1.0 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.67 54.0 4.51e-01 97.4% 50.7%
3832543 7516.1.1.41 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase 0.67 56.0 2.98e-01 100.0% 4.3%
3947895 4.26.1.4 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › zf-IS66 0.66 60.0 4.87e-01 100.0% 55.7%
4959949 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.66 45.0 3.88e-01 94.9% 43.1%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.66 54.0 3.51e-01 97.4% 22.3%
5027751 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.66 53.0 3.72e-01 100.0% 40.0%
3925865 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 53.0 3.85e-01 97.4% 31.7%
4546371 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.65 48.0 3.49e-01 100.0% 27.5%
5018717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 51.0 4.69e-01 100.0% 67.3%
3222288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 48.0 3.69e-01 100.0% 32.2%
3689675 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 49.0 3.91e-01 97.4% 40.0%
3986836 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.64 58.0 5.12e-01 100.0% 70.9%
3255418 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.63 50.0 3.00e-01 100.0% 35.1%
3813872 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.63 49.0 3.00e-01 97.4% 14.0%
3488617 395.1.1.0 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.62 42.0 4.10e-01 71.8% 66.7%
3258452 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 47.0 3.56e-01 97.4% 38.3%
3995477 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 4.03e-01 79.5% 69.1%
4935307 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 3.88e-01 94.9% 43.8%
3507295 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.61 48.0 3.58e-01 94.9% 35.0%
3587666 330.1.1.11 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF1071 0.60 48.0 3.36e-01 92.3% 68.1%
4607738 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 49.0 3.61e-01 92.3% 70.9%
160843 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 45.0 3.40e-01 97.4% 29.9%
5035417 3010.1.1.0 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.60 43.0 3.38e-01 82.1% 50.5%
4405445 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 44.0 3.85e-01 100.0% 50.0%
3555102 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 3.42e-01 100.0% 32.5%
3669809 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.58 49.0 3.50e-01 100.0% 56.0%
2755266 3709.1.1.1 a+b two layers › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › T7SS_ESX1_EccB 0.58 39.0 3.99e-01 100.0% 73.7%
3624119 2.3.1.2 beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.58 43.0 3.02e-01 87.2% 44.1%
5040847 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 44.0 2.68e-01 94.9% 11.9%
5073695 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 45.0 3.55e-01 100.0% 58.0%
4249123 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.57 42.0 2.77e-01 100.0% 60.4%
4972532 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.56 42.0 3.36e-01 87.2% 47.8%
3837975 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 41.0 2.84e-01 100.0% 20.6%
3993949 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.56 42.0 4.17e-01 92.3% 86.7%
3956463 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.56 42.0 2.67e-01 100.0% 14.1%
3491344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.35e-01 74.4% 34.5%
4963337 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.56 40.0 3.03e-01 92.3% 27.7%
3771406 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.30e-01 100.0% 31.2%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.55 41.0 3.48e-01 97.4% 44.7%
4966827 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 41.0 3.15e-01 97.4% 31.7%
1245468 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.54 39.0 3.94e-01 94.9% 81.0%
3618003 389.1.1.112 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29137 0.53 43.0 3.97e-01 97.4% 81.8%
4954522 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 40.0 3.24e-01 92.3% 48.9%
3961814 604.2.1.1 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.53 37.0 2.67e-01 71.8% 19.3%
3960795 706.2.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.53 37.0 3.64e-01 87.2% 71.1%
4079740 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.52 41.0 3.22e-01 100.0% 43.8%
5072529 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 38.0 3.27e-01 100.0% 51.1%
5045252 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.52 40.0 3.17e-01 94.9% 46.0%
3396952 10.12.1.12 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.51 42.0 2.59e-01 100.0% 15.1%
3672794 207.1.1.67 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6 0.51 40.0 2.29e-01 94.9% 50.3%
5023444 1.1.1.5 beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.50 40.0 3.12e-01 100.0% 65.5%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 3.00e-01 100.0% 33.9%