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UVF62600.1

Arc-Vir

ON649702__UVF62600.1__X__00123

Identity

Accession:
ON649702 ↗
Protein ID:
UVF62600.1 ↗
Kingdom:
archaea

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Magrovirales› Aoguangviridae› Aobingvirus› Poseidoniales_virus_YSH_150918

TaxID: 3071324

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00210__D15-72
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4beuA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.58 43.0 3.13e-01 82.1% 74.9%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 44.0 2.99e-01 92.9% 56.0%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.08e-01 73.2% 48.5%
2v4jA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.52 36.0 2.58e-01 73.2% 36.7%
3up8A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.52 42.0 2.81e-01 98.2% 79.0%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 36.0 3.18e-01 78.6% 80.0%
3my7A02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.50 34.0 2.52e-01 75.0% 96.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4069056 101.1.1.22 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PapB 0.53 39.0 3.59e-01 80.4% 80.8%
3941757 101.1.9.32 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.51 35.0 2.85e-01 76.8% 70.0%
D2 medium residues 57-140
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.80 54.0 6.04e-01 70.2% 100.0%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.74 53.0 4.90e-01 75.0% 72.9%
2ctqA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.71 49.0 4.73e-01 71.4% 64.9%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 53.0 5.37e-01 84.5% 95.2%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 47.0 3.98e-01 72.6% 45.7%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 53.0 4.55e-01 86.9% 75.7%
5ojcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 48.0 3.97e-01 76.2% 55.8%
3rmiA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.66 48.0 4.47e-01 76.2% 70.5%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.66 46.0 4.32e-01 73.8% 93.3%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.64 56.0 5.15e-01 98.8% 90.9%
2h9dD00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.63 45.0 4.31e-01 76.2% 73.0%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.63 46.0 4.82e-01 77.4% 98.7%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 44.0 3.76e-01 79.8% 92.5%
4nq0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 52.0 3.78e-01 100.0% 33.1%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 41.0 3.57e-01 73.8% 56.0%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.59 49.0 3.99e-01 91.7% 77.4%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.58 43.0 3.54e-01 81.0% 42.6%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 42.0 4.51e-01 81.0% 91.7%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 51.0 4.35e-01 100.0% 83.5%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 51.0 4.26e-01 100.0% 78.7%
2de2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 43.0 3.30e-01 78.6% 70.1%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.57 47.0 4.51e-01 94.0% 81.6%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 41.0 4.07e-01 84.5% 70.8%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 41.0 4.34e-01 76.2% 94.4%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 50.0 4.15e-01 100.0% 86.4%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.56 38.0 3.78e-01 76.2% 66.3%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 32.0 3.16e-01 76.2% 51.1%
2qhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 43.0 3.02e-01 91.7% 68.4%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.52 36.0 4.01e-01 84.5% 95.2%
2y1hB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 46.0 3.29e-01 100.0% 83.4%
1y8qC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 3.01e-01 92.9% 43.7%
6l25A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 43.0 3.04e-01 100.0% 29.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081525 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.78 61.0 4.88e-01 83.3% 61.9%
3243948 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.76 63.0 4.70e-01 89.3% 75.5%
3246273 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.74 56.0 4.27e-01 81.0% 89.2%
4946803 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.73 56.0 3.56e-01 82.1% 20.5%
3960236 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.70 54.0 4.50e-01 82.1% 87.6%
4269685 192.11.1.1 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.69 45.0 5.08e-01 76.2% 90.5%
3961624 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.68 60.0 4.73e-01 100.0% 46.7%
4033222 604.39.1.6 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › QueT 0.67 49.0 4.09e-01 77.4% 77.3%
5074758 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.67 48.0 4.94e-01 75.0% 90.0%
996952 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.67 50.0 5.02e-01 89.3% 77.6%
3999743 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.66 49.0 4.00e-01 79.8% 89.4%
5029393 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.66 53.0 5.24e-01 88.1% 92.1%
4020132 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.66 55.0 4.69e-01 91.7% 83.0%
3536798 633.24.1.4 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 0.65 47.0 4.52e-01 77.4% 86.0%
3809830 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.65 57.0 5.32e-01 96.4% 77.1%
3603891 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.65 47.0 4.56e-01 76.2% 78.7%
3391605 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 46.0 5.08e-01 76.2% 100.0%
3219029 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 49.0 3.99e-01 84.5% 87.2%
4466880 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.63 52.0 4.16e-01 100.0% 46.9%
3729754 159.1.2.18 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › CLPTM1 0.61 49.0 4.98e-01 88.1% 96.5%
4983511 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.61 46.0 3.87e-01 82.1% 61.3%
5053821 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.61 44.0 4.25e-01 78.6% 69.0%
3610184 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.60 53.0 4.74e-01 100.0% 78.3%
4007927 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.60 45.0 3.11e-01 82.1% 71.7%
3284 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.59 41.0 3.57e-01 73.8% 56.0%
3771911 109.4.1.1512 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcp11 0.58 44.0 3.35e-01 79.8% 39.5%
3916165 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.57 46.0 3.65e-01 88.1% 58.3%
1395462 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.55 42.0 3.71e-01 82.1% 58.9%
3999160 2004.1.1.542 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5, AAA_7 0.54 40.0 2.42e-01 77.4% 42.4%
4244937 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.54 43.0 3.04e-01 90.5% 26.9%
4505600 2003.1.1.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_4 0.52 45.0 2.96e-01 98.8% 34.5%