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UVF62620.1

Arc-Vir

ON649703__UVF62620.1__X__00023

Identity

Accession:
ON649703 ↗
Protein ID:
UVF62620.1 ↗
Kingdom:
archaea

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yangshan_Harbor_Nitrososphaeria_virus

TaxID: 2969597

Cluster

View cluster (351 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-45_57-171
PDB
Domain cluster: rep: MT764210__UXF49854.1__7841G1D8-26__00026__D257-398
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.79 59.0 6.57e-01 100.0% 95.8%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.79 65.0 6.93e-01 98.0% 98.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.77 66.0 6.84e-01 100.0% 96.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.73 47.0 5.57e-01 98.6% 96.0%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 36.0 4.51e-01 75.0% 77.2%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.72 59.0 6.36e-01 98.0% 100.0%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.71 62.0 6.33e-01 99.3% 95.7%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.69 65.0 5.74e-01 100.0% 80.5%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.69 46.0 5.14e-01 100.0% 87.6%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 35.0 4.36e-01 83.8% 81.1%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 45.0 5.22e-01 98.0% 97.1%
4q9bA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 35.0 4.17e-01 76.4% 75.2%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.66 38.0 3.90e-01 80.4% 59.0%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 36.0 3.95e-01 77.0% 67.2%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.62 38.0 4.17e-01 85.8% 73.2%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.62 38.0 4.40e-01 83.8% 86.3%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 32.0 4.02e-01 83.1% 83.9%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.59 40.0 4.12e-01 93.2% 70.6%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 35.0 3.82e-01 98.0% 69.6%
3pfeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.26e-01 91.9% 79.2%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.59 39.0 4.09e-01 99.3% 74.0%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 36.0 3.65e-01 100.0% 62.3%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 52.0 3.89e-01 98.0% 80.9%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 35.0 3.68e-01 100.0% 68.9%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 45.0 3.85e-01 85.1% 68.0%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 51.0 4.05e-01 98.0% 78.6%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 49.0 3.87e-01 98.0% 81.0%
6h9xA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 49.0 3.83e-01 98.0% 69.6%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.55 34.0 3.56e-01 99.3% 66.2%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.55 38.0 3.45e-01 100.0% 52.2%
1sesA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 50.0 3.90e-01 100.0% 78.9%
6y1zA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 49.0 4.37e-01 98.0% 80.2%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 4.25e-01 77.0% 100.0%
3rqwA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 49.0 4.51e-01 98.0% 92.6%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 48.0 4.38e-01 99.3% 82.3%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 31.0 3.91e-01 95.3% 97.6%
3qw9B00 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.52 42.0 4.10e-01 86.5% 100.0%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 46.0 4.15e-01 99.3% 81.0%
2ddzE00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 41.0 3.78e-01 83.8% 83.2%
4afhE00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 46.0 4.13e-01 99.3% 79.2%
6d6tA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 46.0 4.12e-01 99.3% 80.5%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.61e-01 96.6% 74.6%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.51 39.0 3.58e-01 80.4% 88.5%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.50 35.0 3.37e-01 89.9% 62.7%
8eisA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.50 38.0 3.50e-01 87.8% 59.0%
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.50 35.0 3.40e-01 89.9% 62.8%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 45.0 4.03e-01 97.3% 98.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928893 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.79 73.0 7.37e-01 98.6% 97.9%
5454 304.124.1.2 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.77 66.0 6.89e-01 100.0% 97.8%
5083619 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.75 67.0 6.87e-01 98.6% 96.5%
5040945 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.74 69.0 6.88e-01 100.0% 96.7%
4030972 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 57.0 6.29e-01 98.6% 99.2%
3585212 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 69.0 5.99e-01 100.0% 93.0%
4562028 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.73 50.0 5.14e-01 99.3% 72.4%
3964886 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.72 63.0 6.50e-01 96.6% 97.9%
3589225 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.70 61.0 6.36e-01 99.3% 99.3%
3838060 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.68 40.0 3.86e-01 100.0% 52.1%
4069303 304.153.1.1 ↗ a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain › ColG_sub 0.68 47.0 5.12e-01 100.0% 86.7%
3280414 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.67 40.0 4.69e-01 90.5% 83.8%
3387344 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.65 38.0 3.93e-01 100.0% 59.3%
3163625 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.63 37.0 3.81e-01 100.0% 59.3%
3333639 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.62 40.0 4.11e-01 86.5% 65.5%
3788569 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 4.52e-01 83.1% 82.4%
4941514 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.59 38.0 4.62e-01 83.1% 100.0%
3963954 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.58 35.0 3.60e-01 99.3% 60.0%
3523342 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.57 44.0 4.17e-01 91.9% 67.2%
3705145 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 52.0 4.85e-01 99.3% 91.1%
196538 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.56 35.0 3.68e-01 100.0% 68.9%
5049458 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.56 49.0 4.06e-01 94.6% 96.2%
3701983 304.153.1.0 ↗ a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain 0.56 51.0 4.81e-01 98.6% 84.0%
4973362 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 50.0 3.84e-01 98.0% 71.5%
4423196 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.56 51.0 3.82e-01 100.0% 78.9%
5000855 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.55 51.0 3.78e-01 100.0% 78.1%
5037833 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.55 31.0 3.23e-01 98.6% 57.2%
4933257 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.55 50.0 3.87e-01 100.0% 85.8%
1918550 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.55 34.0 3.56e-01 99.3% 66.2%
3708605 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.54 41.0 4.42e-01 77.7% 93.6%
3754570 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.54 49.0 4.23e-01 99.3% 77.8%
5025924 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 37.0 4.07e-01 100.0% 85.8%
3491158 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.54 46.0 4.25e-01 93.9% 83.6%
3699878 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.54 41.0 4.48e-01 83.8% 95.2%
3245167 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.54 48.0 4.24e-01 99.3% 83.2%
3474773 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.54 42.0 4.51e-01 95.9% 95.4%
3622098 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.54 40.0 3.26e-01 78.4% 59.3%
3933746 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 31.0 3.41e-01 81.1% 69.2%
3707804 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.53 42.0 4.11e-01 87.2% 76.9%
3385571 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.53 36.0 3.23e-01 100.0% 49.3%
4375009 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.53 47.0 4.11e-01 98.6% 76.9%
3217135 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.53 47.0 4.22e-01 98.0% 82.9%
3496210 11.12.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.52 46.0 4.33e-01 98.0% 91.9%
3478219 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.52 43.0 4.48e-01 88.5% 96.3%
1005533 7503.1.1.9 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › FlgT_M 0.51 39.0 3.79e-01 81.8% 80.8%
3598105 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 39.0 4.35e-01 83.8% 100.0%
3974994 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.51 37.0 3.51e-01 91.2% 64.7%
3582831 11.12.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.51 42.0 3.45e-01 87.8% 68.5%
3217107 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.50 42.0 4.34e-01 96.6% 95.0%