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UVF62670.1

Arc-Vir

ON649703__UVF62670.1__X__00054

Identity

Accession:
ON649703 ↗
Protein ID:
UVF62670.1 ↗
Kingdom:
archaea

Quality

95.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yangshan_Harbor_Nitrososphaeria_virus

TaxID: 2969597

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-35
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra1A02 1.20.58.780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.95 86.0 6.62e-01 100.0% 48.5%
4gyoB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.92 80.0 5.17e-01 100.0% 23.7%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.92 80.0 7.10e-01 100.0% 70.2%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.90 78.0 7.05e-01 100.0% 71.7%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.90 78.0 4.67e-01 100.0% 15.8%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.90 78.0 5.06e-01 100.0% 23.2%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.89 79.0 5.73e-01 100.0% 38.4%
3htmA02 6.10.250.3030 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.89 72.0 6.81e-01 97.0% 75.0%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.89 76.0 6.66e-01 100.0% 64.7%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.86 73.0 4.44e-01 100.0% 37.2%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.85 69.0 5.76e-01 100.0% 51.6%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.84 72.0 5.26e-01 100.0% 35.9%
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.81 69.0 5.57e-01 100.0% 51.5%
4ui9Y03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.81 63.0 4.90e-01 93.9% 38.7%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.77 62.0 4.90e-01 100.0% 42.1%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 63.0 5.25e-01 100.0% 52.4%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.75 58.0 5.27e-01 100.0% 62.3%
4di1C02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.74 62.0 5.90e-01 100.0% 85.4%
4jcsA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.70 55.0 4.75e-01 100.0% 56.5%
4jvtA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.68 56.0 5.33e-01 100.0% 85.4%
1z8sA02 6.10.140.360 Special › Helix non-globular › Helix Hairpins › 0.65 48.0 4.76e-01 100.0% 81.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2099726 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.96 86.0 5.81e-01 100.0% 30.3%
4883518 304.1.1.0 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.95 87.0 6.67e-01 100.0% 48.5%
3169342 109.4.1.381 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rrn11 0.94 83.0 4.89e-01 100.0% 14.7%
2582202 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.94 82.0 7.97e-01 100.0% 89.2%
3310874 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.92 82.0 7.70e-01 100.0% 82.5%
4930198 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.92 81.0 6.59e-01 100.0% 55.0%
3240245 192.17.1.1 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn 0.91 80.0 6.93e-01 100.0% 66.0%
3266678 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.89 75.0 6.09e-01 100.0% 50.8%
3471268 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.86 69.0 5.48e-01 100.0% 44.0%