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ON677304.1__USH44415.1__IGNATIUSPATJAC_53__00053

Bact-Vir

ON677304.1__USH44415.1__IGNATIUSPATJAC_53__00053

Identity

Accession:
ON677304 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fromanvirus› Mycobacterium_phage_IgnatiusPatJac

TaxID: 2950793

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24255.2 best DUF7456 89.7 1.00e-25 100.0% 92.6%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pohA02 6.10.140.940 Special › Helix non-globular › Helix Hairpins › 0.89 60.0 5.10e-01 70.6% 49.4%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.75 64.0 4.15e-01 92.2% 94.4%
3qc7A02 6.10.140.1630 Special › Helix non-globular › Helix Hairpins › 0.75 44.0 4.42e-01 80.4% 58.8%
1bkjA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.74 62.0 4.08e-01 96.1% 34.3%
6nyyE01 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.72 64.0 4.36e-01 98.0% 59.5%
2fqmA01 6.10.140.830 Special › Helix non-globular › Helix Hairpins › 0.71 54.0 5.65e-01 90.2% 95.7%
3ic3A01 3.30.2370.10 Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase 0.70 55.0 5.12e-01 96.1% 68.8%
4kzsA03 3.30.160.710 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 45.0 3.68e-01 70.6% 36.1%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 51.0 3.83e-01 88.2% 80.5%
7mdhA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.59 49.0 3.43e-01 94.1% 35.8%
3hbjA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 46.0 2.97e-01 90.2% 24.6%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.57 45.0 3.75e-01 88.2% 54.4%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 49.0 4.09e-01 100.0% 62.4%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.52 36.0 3.34e-01 72.5% 56.9%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.50 43.0 2.95e-01 98.0% 34.2%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.50 38.0 2.90e-01 80.4% 71.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251163 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.82 57.0 4.61e-01 72.5% 93.3%
5065366 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.79 62.0 4.63e-01 84.3% 35.8%
3291096 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.78 57.0 5.61e-01 82.4% 72.7%
3167617 4029.1.1.1 ↗ a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › Sirohm_synth_M 0.78 50.0 5.51e-01 74.5% 82.5%
3740226 5051.1.1.7 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp 0.73 60.0 3.43e-01 88.2% 21.3%
3454770 109.4.1.621 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.72 55.0 3.36e-01 80.4% 25.0%
3667031 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 49.0 4.51e-01 92.2% 58.7%
4070661 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.64 47.0 4.40e-01 80.4% 64.6%
3616199 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.64 51.0 3.26e-01 88.2% 43.1%
3583377 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 41.0 3.81e-01 70.6% 67.7%
3693975 186.2.1.1 ↗ alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.58 46.0 3.44e-01 88.2% 45.4%
3716962 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.58 43.0 3.08e-01 88.2% 25.1%
3958063 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 45.0 3.63e-01 88.2% 47.4%
4974316 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.55 40.0 2.61e-01 84.3% 17.8%
4031645 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.53 33.0 3.41e-01 88.2% 58.0%
3879022 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.52 35.0 2.96e-01 72.5% 87.4%