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ON724008.1__UVF60317.1__SEA_MURP_43__00043

Bact-Vir

ON724008.1__UVF60317.1__SEA_MURP_43__00043

Identity

Accession:
ON724008 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-156
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21321.4 best HTH_66 40.4 4.20e-10 54.5% 95.2%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 51.0 5.03e-01 82.1% 95.7%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.51 31.0 3.46e-01 100.0% 79.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280706 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.83 49.0 6.30e-01 74.6% 98.8%
3281871 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 52.0 5.51e-01 83.6% 73.3%
3948487 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 54.0 5.39e-01 83.6% 71.1%
3943313 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 53.0 5.67e-01 84.3% 85.2%
3286164 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.63 51.0 4.22e-01 84.3% 91.3%
3281873 101.1.9.84 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.60 54.0 4.53e-01 98.5% 100.0%
3915018 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.52 37.0 3.14e-01 73.1% 65.2%
2541650 3620.1.1.1 alpha bundles › Factor H-binding protein BbCRASP-1 › Factor H-binding protein BbCRASP-1 › Factor H-binding protein BbCRASP-1 › PFam54_60 0.51 38.0 3.36e-01 79.9% 79.7%
3483005 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.51 45.0 4.12e-01 97.8% 88.0%
D2 high residues 158-231
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 51.0 6.43e-01 89.2% 100.0%
2ga1A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 66.0 6.71e-01 82.4% 88.7%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 53.0 5.62e-01 81.1% 75.8%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 55.0 6.32e-01 89.2% 96.4%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 49.0 5.84e-01 81.1% 92.2%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.57e-01 100.0% 83.3%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 47.0 5.35e-01 77.0% 88.9%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 46.0 4.99e-01 90.5% 76.2%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 5.02e-01 91.9% 76.1%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.71 46.0 4.04e-01 78.4% 45.0%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.71 53.0 5.55e-01 100.0% 86.8%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 5.32e-01 93.2% 98.0%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 4.96e-01 71.6% 81.7%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.69 48.0 3.88e-01 73.0% 48.2%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 42.0 4.03e-01 91.9% 52.3%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 53.0 3.56e-01 93.2% 24.6%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 41.0 3.81e-01 81.1% 49.5%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.61 53.0 4.43e-01 94.6% 69.0%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 3.78e-01 71.6% 88.5%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 38.0 4.07e-01 89.2% 73.8%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.59 51.0 4.65e-01 93.2% 85.4%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.87e-01 95.9% 95.5%
3ni7A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 40.0 3.08e-01 79.7% 32.2%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 4.14e-01 87.8% 93.3%
1qb2A00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.55 45.0 4.03e-01 89.2% 74.5%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.26e-01 83.8% 93.3%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.02e-01 94.6% 61.2%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 45.0 3.52e-01 94.6% 97.4%
1nnwB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 43.0 3.06e-01 100.0% 44.6%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043241 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 48.0 6.48e-01 71.6% 100.0%
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 50.0 6.38e-01 75.7% 95.6%
3509159 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.86 55.0 6.05e-01 82.4% 80.0%
4002185 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.85 55.0 5.54e-01 83.8% 65.3%
3544647 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.84 55.0 5.92e-01 83.8% 76.9%
5064314 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 48.0 5.35e-01 71.6% 71.7%
3234222 101.1.1.54 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_1 0.84 48.0 5.54e-01 77.0% 78.2%
3565285 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.83 52.0 5.53e-01 81.1% 72.3%
4929382 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 51.0 5.94e-01 71.6% 85.5%
4659976 101.1.1.25 alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.82 74.0 5.88e-01 100.0% 51.0%
3942514 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 53.0 6.36e-01 94.6% 98.0%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 56.0 6.40e-01 94.6% 94.5%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 54.0 5.74e-01 83.8% 76.9%
3579797 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 51.0 4.96e-01 81.1% 58.7%
3568862 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.81 52.0 5.60e-01 83.8% 75.4%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 53.0 5.83e-01 83.8% 81.7%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 52.0 6.32e-01 91.9% 98.0%
3945880 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.81 57.0 6.50e-01 97.3% 98.2%
5016985 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 48.0 6.04e-01 78.4% 100.0%
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.81 48.0 6.02e-01 70.3% 100.0%
3409145 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.80 49.0 5.81e-01 71.6% 92.0%
3975610 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 48.0 4.97e-01 77.0% 64.3%
4010213 101.1.1.218 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS1 0.80 52.0 6.34e-01 73.0% 100.0%
3505559 101.1.6.19 alpha arrays › HTH › HTH › TrpR › PAX 0.80 53.0 5.34e-01 82.4% 68.0%
4927516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 48.0 5.30e-01 75.7% 75.0%
4945039 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.79 50.0 5.56e-01 73.0% 80.0%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.79 49.0 5.88e-01 79.7% 94.0%
1159643 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.79 55.0 5.62e-01 89.2% 74.6%
3590885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 52.0 5.38e-01 82.4% 72.9%
4245572 101.1.8.16 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › HTH_40 0.78 50.0 5.15e-01 70.3% 68.6%
5020571 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.78 53.0 4.66e-01 95.9% 49.5%
3794969 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 50.0 6.04e-01 83.8% 98.0%
3983783 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.78 52.0 4.73e-01 82.4% 53.7%
3640035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 47.0 4.51e-01 79.7% 54.1%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.76 48.0 5.45e-01 78.4% 85.5%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.76 48.0 5.63e-01 74.3% 94.0%
3706139 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 49.0 5.83e-01 91.9% 98.0%
3942478 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 47.0 5.31e-01 91.9% 83.6%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 51.0 5.79e-01 90.5% 92.7%
4280807 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.75 49.0 5.61e-01 81.1% 89.1%
3997733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 53.0 5.65e-01 91.9% 83.1%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.75 50.0 5.53e-01 93.2% 85.0%
4952807 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.74 55.0 5.53e-01 98.6% 77.3%
4957415 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.73 49.0 5.38e-01 82.4% 85.0%
4002905 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 52.0 5.60e-01 85.1% 84.6%
3597464 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 49.0 5.34e-01 81.1% 85.0%
4998375 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 47.0 4.54e-01 91.9% 58.8%
5034899 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.72 52.0 3.66e-01 98.6% 26.0%
5028266 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 5.95e-01 94.6% 98.3%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.70 49.0 5.56e-01 100.0% 98.2%
3090474 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.70 47.0 3.78e-01 79.7% 37.0%
3281819 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 49.0 4.79e-01 81.1% 67.5%
3410877 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 48.0 4.92e-01 86.5% 75.7%
4174590 101.1.2.61 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.69 51.0 5.45e-01 98.6% 89.2%
4010017 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.69 51.0 5.27e-01 100.0% 82.9%
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 5.32e-01 85.1% 85.7%
4321251 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.67 48.0 4.76e-01 75.7% 98.7%
3913655 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 50.0 4.93e-01 93.2% 75.0%
4974140 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 51.0 4.57e-01 100.0% 61.0%
5060990 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.65 53.0 3.52e-01 97.3% 23.4%
3970884 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.64 50.0 4.58e-01 82.4% 65.3%
None 0.64 52.0 3.51e-01 97.3% 25.0%
4262428 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.63 55.0 3.66e-01 98.6% 59.4%
3693312 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 43.0 4.65e-01 78.4% 88.3%
3933366 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.62 53.0 5.44e-01 97.3% 94.3%
5071227 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.62 55.0 3.53e-01 94.6% 58.3%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.54 49.0 4.28e-01 95.9% 94.3%