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ON741189.1__UTQ80164.1__vBBceSLY4_000087__00087

Bact-Vir

ON741189.1__UTQ80164.1__vBBceSLY4_000087__00087

Identity

Accession:
ON741189 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: representative
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.75 54.0 4.06e-01 100.0% 32.5%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.74 52.0 3.95e-01 100.0% 32.2%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.74 50.0 4.05e-01 75.0% 38.1%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.74 52.0 4.86e-01 98.4% 60.3%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.70 51.0 3.68e-01 76.6% 36.8%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.70 56.0 4.94e-01 100.0% 60.4%
3p2nB02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.70 57.0 3.60e-01 89.1% 28.0%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.70 55.0 5.00e-01 100.0% 64.3%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.70 55.0 3.40e-01 100.0% 15.9%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.68 54.0 3.44e-01 89.1% 31.6%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 52.0 4.11e-01 95.3% 41.6%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.67 53.0 3.31e-01 100.0% 16.3%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 51.0 5.37e-01 100.0% 94.6%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 50.0 3.92e-01 100.0% 38.3%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 53.0 3.41e-01 89.1% 30.7%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 48.0 3.02e-01 100.0% 14.3%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.66 42.0 4.28e-01 85.9% 65.6%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.66 48.0 4.98e-01 100.0% 86.4%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.65 48.0 3.60e-01 78.1% 36.5%
1buqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 51.0 4.17e-01 100.0% 45.6%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 3.65e-01 85.9% 45.5%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.64 45.0 3.54e-01 98.4% 34.3%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.63 41.0 4.09e-01 85.9% 64.6%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.62 52.0 3.44e-01 96.9% 80.1%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 52.0 3.44e-01 93.8% 25.0%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 51.0 4.01e-01 100.0% 54.1%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.60 51.0 4.16e-01 100.0% 50.0%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 45.0 3.85e-01 81.2% 90.6%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 3.94e-01 95.3% 45.8%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 39.0 3.06e-01 90.6% 29.1%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.95e-01 100.0% 54.7%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 38.0 3.99e-01 95.3% 73.7%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.55e-01 76.6% 57.8%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.47e-01 98.4% 40.8%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 43.0 3.36e-01 93.8% 33.7%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 4.06e-01 93.8% 73.8%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.50e-01 100.0% 40.6%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 49.0 4.00e-01 100.0% 73.8%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.69e-01 100.0% 47.9%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.41e-01 100.0% 41.4%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.44e-01 100.0% 44.2%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.62e-01 100.0% 46.3%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 48.0 3.54e-01 100.0% 65.7%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.43e-01 100.0% 42.2%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 40.0 3.43e-01 92.2% 46.9%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 44.0 2.98e-01 96.9% 95.6%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 44.0 3.55e-01 95.3% 48.1%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.47e-01 87.5% 49.1%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.29e-01 98.4% 38.3%
1q6wG00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 3.49e-01 100.0% 89.3%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.38e-01 100.0% 39.5%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 46.0 3.57e-01 98.4% 44.4%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.24e-01 95.3% 35.9%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 42.0 3.56e-01 89.1% 79.6%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.52 44.0 2.94e-01 100.0% 26.4%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.52 43.0 3.70e-01 98.4% 64.3%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.30e-01 100.0% 40.5%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 40.0 2.95e-01 92.2% 30.0%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.50e-01 100.0% 48.4%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 42.0 2.90e-01 100.0% 25.4%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.34e-01 100.0% 45.0%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.51 42.0 3.50e-01 100.0% 96.2%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.28e-01 100.0% 46.5%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.45e-01 100.0% 48.1%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.23e-01 98.4% 41.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950045 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.81 59.0 5.39e-01 100.0% 58.8%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.80 58.0 4.86e-01 100.0% 46.7%
3920557 4210.1.1.3 a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.79 58.0 5.07e-01 100.0% 52.6%
3484671 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.78 54.0 6.04e-01 93.8% 92.0%
5012828 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.75 62.0 3.81e-01 90.6% 20.0%
4992060 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.75 56.0 4.04e-01 100.0% 29.1%
5047928 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.73 56.0 4.58e-01 100.0% 44.2%
3425790 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.73 59.0 5.13e-01 100.0% 58.9%
3706741 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.72 54.0 3.56e-01 100.0% 20.4%
3410286 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.72 53.0 4.65e-01 78.1% 54.7%
3265962 243.3.1.48 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GlfB_C 0.72 56.0 3.90e-01 95.3% 27.9%
3403847 9.1.1.47 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 0.71 54.0 4.83e-01 100.0% 57.8%
3972133 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.71 54.0 3.63e-01 100.0% 21.7%
5047426 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.71 54.0 4.47e-01 100.0% 46.1%
3713548 330.1.1.22 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.71 49.0 4.06e-01 73.4% 43.5%
4026900 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.70 49.0 4.05e-01 96.9% 40.9%
4974362 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.70 54.0 3.59e-01 100.0% 21.4%
5047424 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.70 54.0 4.37e-01 100.0% 44.2%
3496954 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 56.0 3.32e-01 87.5% 23.7%
5083094 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.70 53.0 3.57e-01 100.0% 21.2%
4086554 11.10.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF 0.69 62.0 4.81e-01 100.0% 65.2%
3627240 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.69 54.0 3.50e-01 100.0% 18.7%
3587919 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.68 54.0 3.34e-01 100.0% 15.7%
2769983 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.68 56.0 4.29e-01 100.0% 40.7%
3933484 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.68 60.0 4.46e-01 100.0% 55.2%
5013672 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 48.0 4.80e-01 87.5% 73.8%
9395 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.67 51.0 3.45e-01 100.0% 21.7%
3474976 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.67 53.0 4.17e-01 100.0% 42.3%
3271674 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.66 53.0 4.83e-01 90.6% 91.1%
4945010 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 58.0 3.69e-01 100.0% 25.8%
5037445 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.66 50.0 3.35e-01 100.0% 20.4%
5016617 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.66 46.0 3.04e-01 93.8% 17.1%
3538024 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.66 50.0 3.23e-01 95.3% 16.6%
3301984 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 50.0 5.37e-01 100.0% 96.4%
5037261 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.65 50.0 3.87e-01 100.0% 35.5%
3445416 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 58.0 3.60e-01 100.0% 18.6%
4947640 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.65 45.0 3.06e-01 93.8% 18.4%
4995409 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.65 44.0 2.94e-01 96.9% 18.0%
4997740 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.65 52.0 4.06e-01 100.0% 40.7%
3930324 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.64 55.0 4.41e-01 100.0% 67.4%
3678022 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.64 52.0 3.73e-01 90.6% 43.7%
2765234 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.63 51.0 4.52e-01 100.0% 59.8%
5010078 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 53.0 3.35e-01 98.4% 19.7%
5044863 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.63 45.0 3.71e-01 100.0% 39.2%
3717566 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.62 49.0 3.33e-01 89.1% 49.0%
3501611 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.62 55.0 3.75e-01 100.0% 34.3%
4600806 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.62 45.0 3.84e-01 78.1% 55.5%
4128100 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.62 56.0 3.50e-01 100.0% 60.9%
2659065 265.1.1.3 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat 0.62 56.0 4.77e-01 100.0% 73.3%
3222123 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 47.0 3.80e-01 98.4% 40.7%
3890886 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 53.0 4.95e-01 100.0% 77.5%
3207857 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 3.01e-01 100.0% 14.5%
3262164 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.60 41.0 2.80e-01 95.3% 17.7%
4984061 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.60 43.0 2.81e-01 76.6% 38.7%
4018022 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.60 46.0 3.82e-01 96.9% 45.8%
3973988 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 49.0 2.97e-01 92.2% 38.1%
3303119 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.60 48.0 3.92e-01 100.0% 45.5%
3272235 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.59 51.0 3.91e-01 100.0% 65.8%
4196939 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.59 46.0 4.27e-01 100.0% 66.3%
5055744 5.1.3.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.58 45.0 2.95e-01 90.6% 38.9%
5078865 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 48.0 3.91e-01 100.0% 48.1%
3699156 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.57 45.0 2.85e-01 95.3% 29.5%
5003871 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.56 45.0 3.58e-01 100.0% 42.1%
3923688 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.56 44.0 2.75e-01 90.6% 18.3%
3674547 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.56 42.0 3.30e-01 100.0% 36.0%
3653856 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 47.0 2.99e-01 100.0% 20.9%
3980468 5084.1.1.9 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL 0.53 43.0 3.41e-01 100.0% 40.0%
4955361 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 38.0 2.68e-01 100.0% 20.8%
3474593 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.52 43.0 3.37e-01 98.4% 41.9%
3742632 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.52 43.0 2.92e-01 100.0% 26.6%
4950139 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.52 40.0 3.35e-01 100.0% 45.6%
3989031 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.51 42.0 2.92e-01 98.4% 48.0%
D2 medium residues 97-189
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ecxB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.73 29.0 2.69e-01 91.4% 29.6%
4n21E00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 50.0 4.57e-01 100.0% 63.6%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.63 32.0 2.81e-01 88.2% 32.6%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 56.0 5.28e-01 100.0% 82.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 55.0 5.28e-01 100.0% 84.9%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 56.0 4.86e-01 100.0% 74.4%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 54.0 4.58e-01 100.0% 68.2%
3cesA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.57 34.0 3.50e-01 73.1% 59.8%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 48.0 3.06e-01 94.6% 20.3%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 48.0 3.23e-01 100.0% 42.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511359 4038.1.1.0 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.73 61.0 4.16e-01 100.0% 26.3%
3781009 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 35.0 2.45e-01 89.2% 16.4%
4259017 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.70 40.0 2.90e-01 100.0% 21.7%
1193604 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.68 29.0 2.91e-01 88.2% 37.5%
3442417 5069.1.1.48 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › PGG 0.67 45.0 3.89e-01 98.9% 44.1%
3703290 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 60.0 5.04e-01 100.0% 76.0%
4973468 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 60.0 5.16e-01 100.0% 81.4%
3896368 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 58.0 4.95e-01 100.0% 77.0%
5029396 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 58.0 5.38e-01 98.9% 98.3%
4994900 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 58.0 5.19e-01 100.0% 91.2%
3948092 4038.1.1.0 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.63 55.0 4.30e-01 100.0% 49.5%
4996551 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 58.0 4.98e-01 100.0% 81.4%
4985469 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 57.0 5.03e-01 100.0% 85.1%
3489283 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 55.0 4.90e-01 100.0% 91.1%
3575976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 57.0 4.86e-01 100.0% 71.7%
3633537 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 56.0 4.78e-01 100.0% 97.9%
4283629 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 56.0 4.98e-01 100.0% 98.5%
3800501 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 55.0 4.77e-01 100.0% 91.0%
4123284 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.61 56.0 3.56e-01 100.0% 67.6%
3624443 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 43.0 2.88e-01 100.0% 18.4%
4969864 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 56.0 4.98e-01 100.0% 76.9%
4945806 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 57.0 5.15e-01 100.0% 83.3%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.61 50.0 4.53e-01 100.0% 67.5%
4967223 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 56.0 4.94e-01 100.0% 85.7%
4494181 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 56.0 4.73e-01 100.0% 69.0%
4971920 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 55.0 4.93e-01 100.0% 80.0%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 55.0 5.07e-01 100.0% 80.0%
5008906 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 52.0 4.55e-01 100.0% 83.4%
4943395 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.10e-01 92.5% 51.2%
4581683 3747.1.1.2 a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.58 52.0 4.84e-01 96.8% 98.3%
3616294 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 47.0 4.28e-01 92.5% 85.6%
3233740 604.29.1.1 alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.56 39.0 3.83e-01 100.0% 64.8%
3680858 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 48.0 3.99e-01 100.0% 90.9%
3557902 101.1.2.580 alpha arrays › HTH › HTH › winged helix domain › DEPDC5_CTD 0.53 35.0 3.40e-01 91.4% 61.8%
3606725 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.52 45.0 3.03e-01 100.0% 24.7%
3787966 109.4.1.83 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.51 48.0 3.11e-01 100.0% 31.5%
3880983 376.1.4.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.50 40.0 3.89e-01 87.1% 100.0%
D3 medium residues 215-315
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05133.20 best SPP1_portal 33.5 3.70e-08 98.0% 22.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 30.0 3.53e-01 82.2% 62.0%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 25.0 3.27e-01 77.2% 62.3%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 32.0 3.39e-01 79.2% 55.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 31.0 3.40e-01 82.2% 60.7%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.59 25.0 3.17e-01 70.3% 66.1%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 33.0 3.31e-01 80.2% 60.2%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 31.0 3.40e-01 81.2% 73.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000709 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.60 27.0 3.23e-01 71.3% 60.0%
4363711 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.54 42.0 3.38e-01 83.2% 72.8%
3786307 109.4.1.228 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C 0.53 39.0 2.80e-01 78.2% 37.0%
4929479 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 32.0 3.37e-01 81.2% 67.8%
4980926 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.63e-01 72.3% 79.0%
4957813 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 30.0 3.67e-01 96.0% 89.2%
5025138 101.1.10.80 alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF 0.51 31.0 2.47e-01 80.2% 30.0%
4937392 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.51 33.0 3.16e-01 97.0% 54.4%