←Back to structures
ON755176.1__UZT29428.1__X__00026
Bact-VirON755176.1__UZT29428.1__X__00026
Identity
- Accession:
- ON755176 ↗
- Kingdom:
- phage
Quality
90.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Cullenvirus›
Klebsiella_phage_KYP
TaxID: 2961977
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-180
Domain cluster:
rep: ATP-dependent_DNA_ligase__YP_009094561__Melbournevirus__1560514__D164-283
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d05A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.85 | 57.0 | 6.78e-01 | 100.0% | 98.0% |
| 6imjA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.79 | 59.0 | 5.39e-01 | 100.0% | 59.6% |
| 6rarI01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.75 | 59.0 | 5.31e-01 | 100.0% | 61.0% |
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.72 | 56.0 | 6.21e-01 | 99.3% | 98.3% |
| 6p0cA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.70 | 57.0 | 6.13e-01 | 100.0% | 98.4% |
| 1lqlA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 36.0 | 4.16e-01 | 87.7% | 94.2% |
| 3laxA00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.54 | 32.0 | 3.66e-01 | 88.4% | 78.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599023 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.75 | 63.0 | 5.30e-01 | 100.0% | 55.2% |
| 3947455 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.73 | 61.0 | 5.27e-01 | 100.0% | 59.5% |
| 3606912 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.71 | 62.0 | 5.02e-01 | 100.0% | 52.2% |
| 3434631 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.70 | 47.0 | 5.06e-01 | 84.2% | 77.5% |
| 3605538 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.67 | 64.0 | 5.08e-01 | 100.0% | 57.4% |
| 4012824 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.66 | 61.0 | 5.12e-01 | 100.0% | 60.9% |
| 3182465 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.65 | 61.0 | 5.00e-01 | 100.0% | 57.3% |
| 3497269 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 34.0 | 3.80e-01 | 89.7% | 81.8% |
| 4968119 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.53 | 33.0 | 3.51e-01 | 94.5% | 71.2% |
| 4864681 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.52 | 20.0 | 2.56e-01 | 99.3% | 53.5% |
| 2499603 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.52 | 24.0 | 2.92e-01 | 71.9% | 65.2% |
| 4980948 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.51 | 28.0 | 3.48e-01 | 70.5% | 90.6% |
D2
high
residues 247-326
Domain cluster:
rep: MK256384.1__QBA85097.1__X__00002__D37-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14743.13 best | DNA_ligase_OB_2 | 35.5 | 1.10e-08 | 86.2% | 98.5% |