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ON758385.1__USV40969.1__X__00143

Bact-Vir

ON758385.1__USV40969.1__X__00143

Identity

Accession:
ON758385 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_BUDD

TaxID: 2961708

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-177
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.77 67.0 6.78e-01 100.0% 94.4%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.76 69.0 6.90e-01 100.0% 97.8%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 61.0 6.39e-01 93.4% 97.6%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 67.0 6.32e-01 100.0% 85.3%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.71 65.0 6.49e-01 100.0% 98.9%
3g5wA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.67 51.0 4.16e-01 80.2% 66.3%
2g23K04 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.65 49.0 3.87e-01 80.2% 79.5%
2xu9A03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.65 49.0 4.39e-01 80.2% 73.4%
3zx1A01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.63 50.0 4.15e-01 84.6% 64.4%
5e9aB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 42.0 4.85e-01 91.2% 100.0%
7wguB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.62 43.0 4.35e-01 78.0% 71.4%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 49.0 4.67e-01 100.0% 74.5%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 41.0 4.76e-01 89.0% 100.0%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 40.0 4.68e-01 91.2% 100.0%
5fc9A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 43.0 4.26e-01 79.1% 80.0%
1sddA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 40.0 3.88e-01 72.5% 79.2%
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 4.08e-01 91.2% 80.6%
1ly2A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.50 30.0 3.45e-01 92.3% 83.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.77 67.0 6.86e-01 100.0% 96.6%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.76 69.0 6.87e-01 100.0% 96.8%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.75 67.0 6.66e-01 100.0% 94.7%
3749560 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.65 49.0 3.18e-01 81.3% 50.4%
3842915 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 48.0 4.26e-01 80.2% 71.5%
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 46.0 4.08e-01 76.9% 69.2%
223802 10.2.1.68 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Spike_JR2 0.62 41.0 4.42e-01 93.4% 78.5%
4645680 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 41.0 4.63e-01 80.2% 92.9%
3651307 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.59 46.0 4.23e-01 82.4% 90.4%
3908713 325.1.8.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N 0.58 35.0 4.00e-01 84.6% 88.3%
3236945 2003.1.5.44 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MT-A70 0.57 45.0 2.97e-01 84.6% 66.5%
3829248 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 45.0 4.53e-01 85.7% 94.4%
4937676 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.56 40.0 4.21e-01 78.0% 95.2%
5028240 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 48.0 4.30e-01 97.8% 70.0%
4938163 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.82e-01 92.3% 70.5%
3318678 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 48.0 4.40e-01 98.9% 95.7%
3594978 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.51 40.0 3.05e-01 87.9% 91.7%
5083197 2.1.1.19 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.51 34.0 3.75e-01 90.1% 88.6%
D2 medium residues 4-74
PDB