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ON758385.1__USV41022.1__X__00196

Bact-Vir

ON758385.1__USV41022.1__X__00196

Identity

Accession:
ON758385 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-77
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 38.0 3.99e-01 95.8% 60.6%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 36.0 3.92e-01 91.5% 65.5%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 42.0 4.53e-01 90.1% 84.2%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 42.0 4.22e-01 94.4% 70.4%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 39.0 4.06e-01 98.6% 70.1%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.61 47.0 4.13e-01 84.5% 87.0%
5llyA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 45.0 3.40e-01 81.7% 51.9%
3hcyA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 46.0 3.73e-01 84.5% 49.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 39.0 3.15e-01 91.5% 32.6%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 39.0 3.17e-01 91.5% 32.2%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 41.0 3.56e-01 90.1% 45.6%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 43.0 3.87e-01 80.3% 87.0%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.59 47.0 3.84e-01 98.6% 44.1%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 31.0 3.54e-01 98.6% 69.4%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 3.38e-01 73.2% 89.5%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 44.0 3.70e-01 85.9% 61.4%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 4.00e-01 76.1% 76.5%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 32.0 3.29e-01 100.0% 55.2%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 42.0 3.80e-01 80.3% 59.6%
6zbyD01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 43.0 2.93e-01 84.5% 38.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 33.0 3.51e-01 97.2% 65.6%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.56 35.0 3.88e-01 76.1% 95.7%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 43.0 3.03e-01 83.1% 86.2%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.55 47.0 4.41e-01 100.0% 90.0%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.55 37.0 3.60e-01 71.8% 81.7%
4qycB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.72e-01 80.3% 99.0%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.15e-01 100.0% 37.6%
3vb0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 37.0 2.96e-01 90.1% 32.5%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.54 40.0 4.34e-01 93.0% 98.2%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.50e-01 90.1% 48.8%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 46.0 3.12e-01 100.0% 99.3%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 40.0 3.39e-01 83.1% 96.1%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 3.60e-01 93.0% 68.9%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 2.76e-01 84.5% 23.4%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.52 38.0 2.92e-01 88.7% 30.2%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 31.0 3.01e-01 98.6% 49.4%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 2.90e-01 100.0% 100.0%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.16e-01 100.0% 76.8%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 3.57e-01 90.1% 59.4%
6vv5A01 2.60.40.3130 Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) 0.52 44.0 3.78e-01 98.6% 74.4%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 44.0 3.72e-01 100.0% 84.5%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 42.0 3.49e-01 100.0% 63.8%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.51 43.0 3.43e-01 100.0% 59.1%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.45e-01 94.4% 62.2%
3wuyA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.51 43.0 2.89e-01 95.8% 35.9%
1bdgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 35.0 2.75e-01 73.2% 48.8%
4pavB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 43.0 3.58e-01 98.6% 80.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4435672 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.76 42.0 4.39e-01 94.4% 60.0%
4014812 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.72 40.0 4.35e-01 98.6% 65.0%
3596303 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 50.0 4.95e-01 73.2% 72.0%
3707477 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 46.0 2.86e-01 73.2% 27.0%
2095508 1170.1.2.4 beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Gp_UL130 0.66 38.0 3.81e-01 94.4% 54.1%
3750853 330.1.1.18 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 0.66 45.0 3.86e-01 84.5% 43.3%
3243508 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 45.0 4.04e-01 74.6% 80.0%
3661102 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.64 43.0 4.71e-01 90.1% 90.9%
3707788 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 47.0 3.27e-01 81.7% 40.4%
3825573 5.1.5.184 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR11_2nd 0.62 43.0 2.72e-01 74.6% 17.0%
3834415 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 47.0 2.87e-01 81.7% 20.9%
5064060 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.61 39.0 3.93e-01 100.0% 65.7%
4496894 2003.1.5.153 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 0.60 48.0 3.28e-01 84.5% 79.1%
5036655 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 38.0 4.09e-01 84.5% 76.7%
None 0.60 47.0 3.29e-01 84.5% 81.1%
5027857 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.60 52.0 3.73e-01 100.0% 80.9%
4929550 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.60 43.0 4.39e-01 81.7% 78.6%
3244945 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 33.0 2.74e-01 97.2% 27.7%
3931696 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.60 41.0 3.69e-01 83.1% 49.5%
5028935 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 42.0 4.31e-01 80.3% 77.1%
3508094 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 41.0 2.57e-01 73.2% 30.6%
4977562 316.1.1.12 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Adenyl_transf 0.59 51.0 4.02e-01 100.0% 62.6%
4646311 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.59 48.0 3.38e-01 88.7% 85.5%
1168794 330.1.1.8 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.59 39.0 3.61e-01 98.6% 51.6%
3544563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.90e-01 100.0% 55.2%
3228053 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 37.0 4.04e-01 77.5% 83.6%
1270403 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 40.0 3.38e-01 73.2% 89.5%
3958768 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.44e-01 100.0% 76.2%
3307236 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 44.0 3.71e-01 97.2% 49.2%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 39.0 3.91e-01 73.2% 74.7%
3952939 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.56 45.0 4.49e-01 95.8% 82.7%
4964070 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.55 42.0 2.96e-01 84.5% 27.2%
3564088 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.76e-01 100.0% 54.5%
3189510 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 38.0 4.02e-01 74.6% 93.3%
4932979 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 46.0 3.59e-01 100.0% 52.6%
4018561 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.55 42.0 3.40e-01 84.5% 59.3%
3263502 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.55 37.0 3.49e-01 94.4% 55.6%
3643041 3186.1.1.0 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.54 47.0 3.92e-01 100.0% 75.4%
2093820 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.54 46.0 2.89e-01 97.2% 82.7%
3812068 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.54 41.0 3.18e-01 84.5% 93.5%
3414142 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.54 47.0 3.65e-01 100.0% 63.0%
2859147 7091.1.1.1 a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 0.53 39.0 3.03e-01 100.0% 36.7%
3505247 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 42.0 3.94e-01 100.0% 68.9%
5038851 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.53 44.0 3.08e-01 100.0% 51.1%
3288529 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.52 45.0 3.79e-01 100.0% 78.5%
4878518 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.52 40.0 3.26e-01 85.9% 91.8%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.52 44.0 3.69e-01 100.0% 56.5%
1141950 3449.1.1.1 a+b two layers › Cpn0803 › Cpn0803 › Cpn0803 › CT_584-like 0.51 43.0 3.32e-01 97.2% 42.9%
3971552 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 4.08e-01 84.5% 91.4%
3650169 1.1.1.9 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C 0.51 39.0 2.85e-01 87.3% 59.6%
3705153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 46.0 3.65e-01 98.6% 73.3%
5031715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 46.0 3.65e-01 98.6% 70.4%
4971059 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.50 44.0 3.15e-01 98.6% 94.0%
3717900 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 43.0 2.69e-01 94.4% 22.8%