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ON758385.1__USV41045.1__X__00219

Bact-Vir

ON758385.1__USV41045.1__X__00219

Identity

Accession:
ON758385 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_BUDD

TaxID: 2961708

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-115
PDB
Domain cluster: rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00487__D3-102
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.73 29.0 4.26e-01 91.9% 82.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 29.0 4.35e-01 83.8% 87.5%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 28.0 3.40e-01 91.0% 57.5%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.65 35.0 4.52e-01 98.2% 93.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 30.0 3.77e-01 99.1% 73.5%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 30.0 3.84e-01 86.5% 78.8%
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 36.0 4.51e-01 98.2% 95.5%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 29.0 3.63e-01 97.3% 71.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 4.73e-01 97.3% 92.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 29.0 3.76e-01 85.6% 82.3%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 4.12e-01 98.2% 71.2%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 4.42e-01 99.1% 86.5%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 29.0 3.57e-01 91.9% 80.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 29.0 3.52e-01 91.9% 77.1%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 29.0 3.65e-01 90.1% 83.6%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 4.04e-01 99.1% 77.5%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 29.0 3.71e-01 91.0% 91.7%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 30.0 3.70e-01 92.8% 87.9%
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 28.0 3.34e-01 93.7% 73.3%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.44e-01 99.1% 87.0%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 31.0 3.87e-01 82.0% 95.7%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 4.20e-01 100.0% 86.4%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.41e-01 72.1% 83.6%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 28.0 3.50e-01 91.0% 91.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.50 30.0 3.43e-01 87.4% 83.1%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 28.0 3.09e-01 75.7% 67.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 30.0 4.08e-01 92.8% 66.7%
4269264 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.72 26.0 4.13e-01 91.0% 84.4%
3967108 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.71 25.0 4.25e-01 84.7% 92.5%
4161370 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.68 27.0 3.64e-01 97.3% 66.7%
4185700 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.67 27.0 3.67e-01 72.1% 70.9%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 29.0 3.32e-01 84.7% 54.1%
3247727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 45.0 4.13e-01 97.3% 55.7%
3264236 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 44.0 4.66e-01 98.2% 77.0%
3256547 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 44.0 4.60e-01 98.2% 77.0%
4562140 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.65 35.0 4.71e-01 99.1% 100.0%
4415340 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.65 27.0 3.48e-01 82.0% 66.7%
4448208 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.64 26.0 3.43e-01 70.3% 66.7%
4223146 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.64 26.0 3.46e-01 71.2% 68.3%
4185603 2.1.1.63 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_2 0.63 29.0 3.59e-01 83.8% 67.1%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 41.0 4.21e-01 96.4% 66.4%
4481543 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.63 38.0 4.38e-01 94.6% 82.5%
3493556 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 41.0 4.12e-01 97.3% 66.4%
3513810 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 39.0 3.74e-01 96.4% 54.8%
2512682 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 28.0 3.84e-01 89.2% 90.9%
4532614 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.59 27.0 3.46e-01 80.2% 73.8%
3624498 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 39.0 3.76e-01 96.4% 60.0%
4238582 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.58 28.0 3.53e-01 82.0% 80.0%
3690811 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.58 44.0 4.59e-01 99.1% 89.0%
3742084 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.56 43.0 3.80e-01 100.0% 54.5%
3267845 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 42.0 4.22e-01 99.1% 77.4%
3887127 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 40.0 3.96e-01 99.1% 69.2%
3890749 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 4.26e-01 99.1% 88.9%
3256095 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 44.0 4.47e-01 100.0% 85.5%
3435395 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 30.0 2.47e-01 90.1% 28.8%
3496857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 4.73e-01 100.0% 95.2%
4228956 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 24.0 3.03e-01 80.2% 64.6%
3891866 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.54 43.0 4.01e-01 100.0% 67.1%
3870492 5.1.4.399 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA 0.54 39.0 2.88e-01 83.8% 29.6%
3899275 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 42.0 3.97e-01 99.1% 68.9%
3890869 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 44.0 3.80e-01 99.1% 55.0%
3256023 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.53 45.0 4.26e-01 100.0% 75.6%
3251228 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.15e-01 99.1% 70.3%
4947543 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.52 33.0 3.91e-01 82.9% 94.6%