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ON778006.1__UVD41300.1__X__00002

Bact-Vir

ON778006.1__UVD41300.1__X__00002

Identity

Accession:
ON778006 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_Pae_HB2107-3I

TaxID: 2961987

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-128
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14690.12 best Zn_ribbon_ISL3 44.2 2.70e-11 41.7% 100.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 3.39e-01 76.5% 65.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987572 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 79.0 7.49e-01 100.0% 85.9%
3590401 375.1.1.90 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.84 79.0 7.22e-01 100.0% 86.2%
3278041 101.1.1.441 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Zn_ribbon_ISL3 0.83 78.0 7.26e-01 100.0% 88.6%
5002944 101.1.3.11 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 0.83 69.0 6.74e-01 100.0% 80.8%
3589364 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.82 73.0 6.87e-01 100.0% 80.0%
3501262 101.1.6.18 ↗ alpha arrays › HTH › HTH › TrpR › Zn_ribbon_ISL3 0.81 74.0 6.86e-01 100.0% 84.1%
4952724 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 72.0 7.03e-01 100.0% 88.8%
4938633 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 63.0 6.00e-01 93.9% 85.9%
3953104 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 65.0 6.00e-01 100.0% 83.4%
4950639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.23e-01 94.8% 67.7%
4986251 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 33.0 3.65e-01 82.6% 73.3%
3798153 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 38.0 3.76e-01 74.8% 95.8%
D2 medium residues 150-237_353-370
PDB
Domain cluster: rep: ON107264.1__UOX38256.1__X__00118__D153-237
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01610.24 best DDE_Tnp_ISL3 83.7 2.50e-23 84.9% 38.3%
D3 medium residues 238-347
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01610.24 best DDE_Tnp_ISL3 65.5 9.10e-18 100.0% 45.4%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ykgA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.64 57.0 5.43e-01 100.0% 89.5%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.64 38.0 3.60e-01 90.9% 47.4%
1zu2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 46.0 4.13e-01 78.2% 83.5%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.62 41.0 4.60e-01 90.0% 89.2%
5f42A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.59 36.0 4.10e-01 99.1% 81.7%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.58 49.0 4.86e-01 99.1% 87.1%
2l7kA00 1.10.10.1850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like 0.55 27.0 3.15e-01 98.2% 64.5%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 33.0 3.18e-01 99.1% 58.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3664055 3317.3.1.1 ↗ alpha arrays › KorB C-terminal domain-like › Helical domain of Rubisco accumulation factor 1 › Helical domain of Rubisco accumulation factor 1 › Raf1_N 0.53 43.0 3.99e-01 86.4% 97.0%
3676536 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 41.0 3.58e-01 84.5% 55.3%
3577937 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 42.0 4.14e-01 93.6% 81.7%
D4 medium residues 371-395_408-436
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 43.0 2.74e-01 92.6% 45.3%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.51 39.0 3.80e-01 83.3% 76.3%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.69e-01 90.7% 74.3%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.51 42.0 3.60e-01 98.1% 80.0%
3delB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 41.0 3.06e-01 90.7% 77.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3725161 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 33.0 2.56e-01 98.1% 24.3%
3889952 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.57 29.0 2.68e-01 100.0% 34.3%
1879340 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 44.0 3.83e-01 100.0% 90.4%
4382858 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 37.0 2.17e-01 75.9% 10.4%
3410548 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.52 41.0 3.19e-01 96.3% 42.1%
3169722 109.4.1.298 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel 0.50 32.0 2.10e-01 81.5% 12.4%