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ON814136.1__UVD42741.1__X__00178

Bact-Vir

ON814136.1__UVD42741.1__X__00178

Identity

Accession:
ON814136 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_vB_SauM-V1SA22

TaxID: 2972387

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-91
PDB
Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007225__D2-76
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.64 43.0 4.28e-01 87.1% 66.7%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.62 49.0 5.04e-01 100.0% 90.4%
1f3lA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.62 49.0 3.96e-01 87.1% 97.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 47.0 4.50e-01 98.8% 75.0%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 44.0 3.96e-01 81.2% 93.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.19e-01 76.5% 83.3%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.86e-01 77.6% 91.0%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 46.0 3.12e-01 97.6% 38.2%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.54 37.0 3.46e-01 92.9% 56.6%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.53 47.0 4.64e-01 100.0% 92.4%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.35e-01 91.8% 54.1%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 37.0 2.67e-01 72.9% 42.7%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 45.0 2.97e-01 100.0% 32.3%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 45.0 3.58e-01 100.0% 64.8%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.84e-01 97.6% 85.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511200 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.64 54.0 5.50e-01 96.5% 94.1%
185415 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.64 43.0 4.28e-01 87.1% 66.7%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 43.0 4.26e-01 80.0% 67.8%
3523283 389.1.1.176 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Pep_M12B_propep 0.60 50.0 4.45e-01 94.1% 80.8%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 40.0 3.99e-01 77.6% 67.8%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.91e-01 77.6% 67.8%
4124141 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.57 46.0 2.86e-01 89.4% 73.0%
5043905 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.56 38.0 2.81e-01 70.6% 42.2%
3233672 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 39.0 3.79e-01 77.6% 83.0%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.55e-01 75.3% 63.2%
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.53 46.0 4.32e-01 100.0% 80.0%
3509752 219.1.1.50 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.53 43.0 2.90e-01 89.4% 93.5%
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.52 36.0 3.56e-01 72.9% 82.1%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.52 45.0 4.19e-01 100.0% 97.3%
3881962 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.51 42.0 3.36e-01 91.8% 74.6%
3370517 109.1.1.6 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.50 36.0 3.05e-01 80.0% 41.2%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.50 37.0 3.90e-01 83.5% 89.3%
3239261 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 43.0 2.76e-01 92.9% 33.3%
D2 medium residues 98-156
PDB
Domain cluster: representative
CATH (71)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.81 60.0 4.45e-01 79.7% 57.9%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 66.0 5.92e-01 88.1% 78.8%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 58.0 5.84e-01 78.0% 91.5%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 60.0 5.93e-01 81.4% 96.8%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 54.0 4.94e-01 72.9% 75.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 5.95e-01 88.1% 91.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.07e-01 71.2% 75.4%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 60.0 5.03e-01 86.4% 69.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.67e-01 88.1% 82.2%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 59.0 5.44e-01 88.1% 89.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.67e-01 88.1% 90.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.72 53.0 4.58e-01 79.7% 85.1%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 5.54e-01 84.7% 88.9%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 49.0 3.02e-01 72.9% 44.1%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 54.0 4.06e-01 83.1% 71.3%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 54.0 5.58e-01 84.7% 98.2%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 49.0 3.15e-01 72.9% 57.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 54.0 5.01e-01 84.7% 86.7%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 48.0 3.13e-01 74.6% 47.5%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 52.0 3.63e-01 83.1% 45.1%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 48.0 3.33e-01 74.6% 26.2%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 47.0 3.78e-01 78.0% 91.5%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 46.0 2.74e-01 74.6% 38.4%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.22e-01 72.9% 42.9%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 49.0 4.30e-01 84.7% 92.2%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 44.0 2.98e-01 72.9% 56.3%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 53.0 4.13e-01 100.0% 93.6%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 54.0 3.19e-01 96.6% 18.1%
4y85C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 48.0 3.80e-01 84.7% 66.9%
1zysA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 46.0 3.95e-01 81.4% 84.2%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 43.0 3.47e-01 78.0% 89.2%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.61 42.0 3.93e-01 74.6% 60.5%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.87e-01 74.6% 81.2%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 3.99e-01 83.1% 65.2%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 44.0 3.51e-01 79.7% 84.3%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 48.0 4.12e-01 91.5% 77.6%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.68e-01 81.4% 60.6%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 42.0 3.50e-01 76.3% 44.4%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 44.0 3.79e-01 79.7% 65.9%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 4.61e-01 74.6% 100.0%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 50.0 3.42e-01 96.6% 87.2%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 2.44e-01 72.9% 53.1%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 49.0 5.01e-01 96.6% 100.0%
4bubA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 49.0 3.35e-01 96.6% 88.7%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 3.69e-01 81.4% 70.1%
1qe0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 42.0 3.79e-01 83.1% 78.0%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 40.0 3.37e-01 76.3% 44.5%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 46.0 2.94e-01 100.0% 17.2%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.56 38.0 3.26e-01 71.2% 46.2%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 46.0 3.22e-01 96.6% 54.3%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 45.0 2.93e-01 96.6% 24.0%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.98e-01 81.4% 71.0%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 39.0 3.31e-01 76.3% 42.6%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 42.0 3.48e-01 86.4% 76.9%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 42.0 3.97e-01 81.4% 69.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.09e-01 79.7% 90.2%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 45.0 3.14e-01 98.3% 89.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 41.0 3.96e-01 81.4% 77.6%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 48.0 3.12e-01 98.3% 29.9%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 42.0 2.87e-01 86.4% 81.1%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 3.42e-01 81.4% 56.2%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 46.0 3.15e-01 98.3% 84.7%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 46.0 3.12e-01 94.9% 82.7%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 48.0 3.73e-01 100.0% 63.6%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 4.14e-01 84.7% 89.1%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.53 37.0 2.73e-01 78.0% 72.1%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 41.0 4.07e-01 93.2% 92.4%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.53 41.0 3.10e-01 89.8% 34.6%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.36e-01 81.4% 68.0%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 37.0 3.08e-01 81.4% 46.7%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.08e-01 81.4% 62.1%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.84 63.0 5.80e-01 79.7% 77.3%
3570368 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 68.0 5.56e-01 88.1% 63.0%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.81 56.0 5.59e-01 71.2% 78.3%
3905549 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 67.0 5.40e-01 88.1% 60.0%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 55.0 5.23e-01 71.2% 87.1%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 59.0 5.88e-01 78.0% 98.3%
5055039 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.79 61.0 4.53e-01 81.4% 47.9%
4938828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 63.0 6.35e-01 86.4% 90.0%
4026958 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.85e-01 76.3% 96.4%
3924619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 64.0 4.96e-01 88.1% 60.8%
3656401 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 58.0 5.36e-01 79.7% 77.3%
3409460 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 63.0 5.15e-01 88.1% 67.6%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.77 63.0 5.80e-01 88.1% 85.3%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 63.0 5.32e-01 88.1% 69.5%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 61.0 6.07e-01 84.7% 96.7%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 58.0 4.95e-01 83.1% 69.5%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.90e-01 88.1% 98.4%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 59.0 5.10e-01 86.4% 67.8%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.37e-01 79.7% 84.6%
3622425 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.73 60.0 4.71e-01 88.1% 62.5%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.73 56.0 4.87e-01 83.1% 73.3%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 59.0 5.08e-01 88.1% 68.9%
4983579 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.72 54.0 5.14e-01 81.4% 81.4%
4285199 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.70 55.0 4.72e-01 86.4% 90.5%
3284625 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.70 49.0 2.90e-01 72.9% 37.8%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 62.0 5.14e-01 98.3% 100.0%
4227222 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.69 57.0 5.45e-01 91.5% 98.6%
4150396 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.69 57.0 5.32e-01 93.2% 100.0%
3697881 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.69 48.0 2.82e-01 72.9% 38.0%
4873705 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.69 47.0 3.60e-01 71.2% 96.9%
4939020 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.68 48.0 3.47e-01 74.6% 84.8%
4483443 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.68 47.0 2.98e-01 72.9% 49.8%
1349791 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.68 48.0 3.37e-01 74.6% 83.2%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 59.0 5.14e-01 98.3% 98.9%
4944107 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.67 48.0 3.53e-01 74.6% 84.5%
4323995 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 56.0 5.28e-01 96.6% 100.0%
4497830 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.67 47.0 3.26e-01 74.6% 89.2%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 59.0 4.94e-01 100.0% 96.0%
None — 0.66 47.0 2.88e-01 74.6% 28.5%
4245071 2003.1.2.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.66 46.0 2.91e-01 72.9% 46.0%
3227979 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.66 50.0 4.35e-01 81.4% 62.2%
4086268 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 48.0 4.16e-01 78.0% 66.7%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 46.0 4.66e-01 74.6% 80.0%
4087972 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.65 57.0 5.22e-01 100.0% 97.5%
3598363 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.65 46.0 2.85e-01 74.6% 29.4%
3508531 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.65 48.0 5.19e-01 93.2% 94.0%
3281458 2003.1.3.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.65 46.0 2.75e-01 74.6% 66.1%
3839111 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 4.34e-01 83.1% 72.2%
4948812 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.65 45.0 2.73e-01 72.9% 22.1%
1688900 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.65 46.0 3.26e-01 74.6% 92.5%
None — 0.64 45.0 2.65e-01 74.6% 47.0%
4192943 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.64 45.0 3.57e-01 74.6% 92.0%
4935792 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 47.0 3.47e-01 79.7% 85.6%
3983339 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.64 50.0 3.44e-01 84.7% 25.5%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.64 55.0 4.51e-01 98.3% 85.5%
4317888 2003.1.2.147 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_3 0.63 45.0 3.51e-01 74.6% 92.8%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.48e-01 88.1% 88.2%
5040072 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 44.0 3.12e-01 74.6% 63.2%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.81e-01 100.0% 97.8%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 53.0 4.60e-01 98.3% 95.8%
4935198 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 46.0 3.38e-01 79.7% 85.0%
3959770 4.31.1.0 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.62 52.0 4.60e-01 96.6% 100.0%
4466588 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 43.0 3.25e-01 74.6% 61.3%
3969301 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 43.0 3.39e-01 74.6% 73.8%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.62 48.0 3.99e-01 88.1% 69.1%
4939899 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 45.0 3.08e-01 79.7% 60.5%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 45.0 4.66e-01 79.7% 100.0%
3967510 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.58 39.0 3.75e-01 76.3% 58.6%
3280978 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 41.0 3.91e-01 74.6% 71.4%
3969312 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 42.0 4.06e-01 81.4% 75.7%
3215090 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 42.0 4.15e-01 78.0% 83.1%
3789072 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 2.90e-01 96.6% 33.2%
415 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 41.0 3.96e-01 81.4% 77.6%
4991489 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 47.0 4.52e-01 98.3% 98.6%
3669875 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 43.0 3.61e-01 88.1% 100.0%
3831169 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.54 45.0 3.00e-01 100.0% 29.1%
3924869 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 38.0 2.87e-01 81.4% 75.3%
3998167 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.52 41.0 2.78e-01 91.5% 70.0%
3937782 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 37.0 2.80e-01 81.4% 72.7%
D3 medium residues 157-229
PDB
Domain cluster: rep: LC576631.1__BCK59760.1__X__00065__D158-237
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wt0A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 41.0 3.28e-01 71.2% 53.8%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 45.0 3.92e-01 78.1% 77.6%
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.58 40.0 2.61e-01 79.5% 17.8%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 3.74e-01 84.9% 75.2%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 40.0 3.73e-01 76.7% 83.0%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 41.0 3.72e-01 79.5% 83.7%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 43.0 3.84e-01 84.9% 77.9%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 40.0 3.67e-01 78.1% 84.8%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 43.0 3.70e-01 89.0% 74.8%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 3.77e-01 75.3% 84.0%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 39.0 3.56e-01 78.1% 80.2%
3knvA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 3.26e-01 75.3% 96.7%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.22e-01 72.6% 58.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 34.0 3.70e-01 80.8% 93.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598807 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 58.0 5.99e-01 76.7% 91.3%
3592370 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.78 68.0 5.77e-01 97.3% 68.3%
3605531 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.76 59.0 5.61e-01 82.2% 81.0%
4096914 3822.1.1.1 ↗ alpha complex topology › Intergenic-region protein › Intergenic-region protein › Intergenic-region protein › Antirestrict 0.68 48.0 3.86e-01 74.0% 74.3%
4439755 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 45.0 4.08e-01 83.6% 88.0%
4532648 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 43.0 3.88e-01 78.1% 77.8%
4122293 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 44.0 4.00e-01 83.6% 87.0%
4489788 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 44.0 4.00e-01 84.9% 88.0%
4128583 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 41.0 3.68e-01 75.3% 79.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.21e-01 72.6% 92.7%
3694248 4224.1.1.1 ↗ few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger › zf-CHY 0.56 38.0 3.86e-01 71.2% 90.4%
4928458 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 41.0 3.84e-01 78.1% 86.7%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.17e-01 71.2% 93.3%
4279058 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 41.0 3.88e-01 79.5% 85.6%
4297095 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.55 42.0 3.75e-01 82.2% 80.0%
4940298 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.55 40.0 3.80e-01 78.1% 85.6%
3720527 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 32.0 2.47e-01 76.7% 24.8%
4046713 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 40.0 3.79e-01 79.5% 87.8%
5029138 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 40.0 3.77e-01 78.1% 85.6%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.58e-01 71.2% 63.5%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 35.0 3.74e-01 71.2% 76.9%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 37.0 3.87e-01 72.6% 86.2%
4994848 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.53 42.0 3.79e-01 87.7% 83.8%
4961690 3292.1.1.1 ↗ a+b complex topology › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine_deam_C 0.53 39.0 2.86e-01 79.5% 67.3%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 38.0 3.80e-01 75.3% 77.3%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.87e-01 75.3% 78.6%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 36.0 3.75e-01 72.6% 87.7%
4959548 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 37.0 3.50e-01 78.1% 86.2%
4054592 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 40.0 3.63e-01 83.6% 80.0%
4381486 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 37.0 3.54e-01 79.5% 90.9%
3703034 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 36.0 3.64e-01 75.3% 90.5%
4639808 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 37.0 3.54e-01 79.5% 90.0%