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ON854455.1__UUG68575.1__YPHTV1_00013__00013

Bact-Vir

ON854455.1__UUG68575.1__YPHTV1_00013__00013

Identity

Accession:
ON854455 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Halomonas_phage_YPHTV-1

TaxID: 2933069

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-63
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.75 63.0 4.38e-01 100.0% 30.4%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.75 46.0 2.96e-01 100.0% 15.3%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 59.0 4.36e-01 100.0% 93.1%
1iuhA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.68 45.0 3.00e-01 100.0% 17.5%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 57.0 4.38e-01 100.0% 42.2%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 48.0 3.71e-01 82.6% 85.2%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 3.03e-01 91.3% 85.1%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 53.0 3.11e-01 93.5% 99.0%
4fbdA01 3.30.2310.50 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 0.60 50.0 3.87e-01 100.0% 75.4%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 49.0 2.99e-01 100.0% 82.1%
2zosB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 44.0 3.19e-01 89.1% 30.8%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.58 44.0 2.68e-01 84.8% 21.9%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 44.0 3.50e-01 100.0% 42.4%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 45.0 3.89e-01 100.0% 71.4%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 42.0 3.81e-01 100.0% 67.5%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.78e-01 100.0% 94.3%
2jraA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 36.0 3.74e-01 71.7% 90.5%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 2.94e-01 84.8% 37.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.40e-01 91.3% 44.3%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.78e-01 95.7% 61.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 43.0 3.50e-01 93.5% 46.2%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.54 42.0 2.77e-01 87.0% 20.5%
1tvdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.27e-01 95.7% 52.6%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.72e-01 97.8% 83.8%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.52 38.0 3.76e-01 80.4% 88.2%
1w7lA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.02e-01 100.0% 53.8%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.52 42.0 2.99e-01 95.7% 33.5%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 35.0 2.27e-01 76.1% 21.3%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.28e-01 91.3% 100.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 44.0 3.37e-01 100.0% 59.6%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.53e-01 100.0% 85.7%
2o1bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 43.0 3.02e-01 97.8% 53.3%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.42e-01 97.8% 20.1%
3n5mB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 44.0 2.97e-01 100.0% 48.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071935 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.83 71.0 5.06e-01 100.0% 33.8%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.74 62.0 4.83e-01 100.0% 48.2%
4928263 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 61.0 4.74e-01 100.0% 50.0%
5016233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 61.0 4.73e-01 100.0% 45.4%
4927204 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 62.0 5.03e-01 100.0% 60.0%
5042461 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 41.0 2.69e-01 100.0% 13.8%
3628286 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.71 59.0 4.39e-01 100.0% 36.2%
5052185 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 58.0 4.31e-01 100.0% 39.2%
4998154 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 57.0 4.25e-01 100.0% 34.8%
4928701 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 57.0 4.53e-01 100.0% 46.7%
4945022 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 58.0 4.64e-01 100.0% 46.0%
3999192 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 56.0 4.80e-01 100.0% 56.2%
277 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.68 45.0 3.00e-01 100.0% 17.5%
3911145 223.7.1.1 ↗ a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.68 58.0 4.15e-01 100.0% 32.9%
4944313 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 58.0 4.20e-01 100.0% 34.1%
5001593 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 54.0 4.00e-01 100.0% 47.9%
4929825 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 43.0 3.19e-01 100.0% 26.1%
3765735 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.65 54.0 3.77e-01 100.0% 39.4%
5049461 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 51.0 3.99e-01 100.0% 42.4%
5050640 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 53.0 3.96e-01 100.0% 38.5%
3593907 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 45.0 2.75e-01 73.9% 96.6%
5077835 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 52.0 3.99e-01 100.0% 40.0%
5049326 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 48.0 3.82e-01 100.0% 44.8%
5051729 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 52.0 3.67e-01 100.0% 38.7%
3375922 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.61 48.0 3.78e-01 93.5% 39.0%
3503177 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 2.66e-01 82.6% 17.2%
3498702 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.61 47.0 4.75e-01 91.3% 91.1%
3594555 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 41.0 2.87e-01 71.7% 42.5%
5040519 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 49.0 3.10e-01 93.5% 17.7%
5057601 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.58 44.0 3.12e-01 89.1% 28.9%
4984108 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 45.0 3.57e-01 100.0% 40.0%
3945545 4317.1.1.1 ↗ a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 0.58 47.0 4.35e-01 100.0% 72.3%
3926450 2004.1.1.230 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like 0.57 46.0 3.07e-01 87.0% 32.9%
3507420 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 3.07e-01 71.7% 47.4%
3177309 101.1.2.7 ↗ alpha arrays › HTH › HTH › winged helix domain › HSF_DNA-bind 0.56 41.0 3.40e-01 82.6% 100.0%
3939776 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.72e-01 91.3% 19.7%
3526919 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.55 44.0 3.42e-01 93.5% 42.1%
3572782 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.53 41.0 2.48e-01 91.3% 17.5%
3301183 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.53 39.0 3.30e-01 80.4% 71.2%
3219781 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.23e-01 93.5% 81.9%
4261006 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.52 46.0 3.17e-01 100.0% 80.6%
4943885 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.52 42.0 3.13e-01 100.0% 71.4%
3262513 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 46.0 3.37e-01 100.0% 46.7%
4070305 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.52 47.0 3.12e-01 100.0% 28.2%
4033086 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.51 47.0 3.12e-01 100.0% 28.2%
3216286 5.1.3.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 0.51 35.0 2.37e-01 73.9% 31.4%
4975745 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 39.0 3.04e-01 100.0% 63.4%
4975800 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.50 44.0 3.09e-01 97.8% 38.6%