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ON854455.1__UUG68608.1__YPHTV1_00046__00046

Bact-Vir

ON854455.1__UUG68608.1__YPHTV1_00046__00046

Identity

Accession:
ON854455 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Halomonas_phage_YPHTV-1

TaxID: 2933069

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 46.0 3.89e-01 100.0% 39.6%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 6.33e-01 98.3% 96.4%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 51.0 3.96e-01 98.3% 36.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.22e-01 94.8% 71.2%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.57e-01 89.7% 89.8%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.20e-01 96.6% 71.2%
2qejD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 50.0 3.87e-01 100.0% 37.3%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 47.0 4.15e-01 100.0% 49.4%
1aw7A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 47.0 3.64e-01 100.0% 35.8%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 39.0 2.98e-01 100.0% 25.4%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 44.0 2.84e-01 74.1% 91.5%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.61 37.0 3.61e-01 100.0% 53.0%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.60e-01 100.0% 44.2%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.59 44.0 3.33e-01 100.0% 33.8%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.59 36.0 3.55e-01 100.0% 55.7%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 51.0 3.98e-01 100.0% 45.8%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.66e-01 100.0% 46.9%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 46.0 3.68e-01 96.6% 44.5%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 47.0 3.86e-01 100.0% 47.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.83e-01 100.0% 46.2%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.44e-01 98.3% 91.3%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.57 44.0 3.86e-01 100.0% 54.2%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.78e-01 100.0% 50.0%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.56 48.0 4.09e-01 96.6% 69.1%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.68e-01 98.3% 52.1%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.55 45.0 3.63e-01 100.0% 45.3%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.53e-01 100.0% 49.0%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.69e-01 100.0% 46.8%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.80e-01 100.0% 58.0%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 48.0 3.42e-01 100.0% 41.5%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 40.0 2.62e-01 81.0% 66.0%
3m1cA04 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.53 44.0 3.54e-01 100.0% 85.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.53 43.0 3.51e-01 91.4% 84.1%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 46.0 3.71e-01 100.0% 56.3%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.53 42.0 3.35e-01 98.3% 76.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 44.0 3.80e-01 100.0% 57.3%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 47.0 3.53e-01 100.0% 42.3%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.53 45.0 3.08e-01 100.0% 72.5%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 39.0 3.01e-01 82.8% 45.8%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 46.0 3.53e-01 98.3% 67.4%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 45.0 3.73e-01 100.0% 55.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.64e-01 100.0% 60.6%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.51 34.0 3.37e-01 98.3% 65.6%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.62e-01 100.0% 59.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3725727 3792.1.1.0 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.73 46.0 4.01e-01 100.0% 42.4%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 6.19e-01 100.0% 94.3%
3312688 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.73 42.0 3.37e-01 100.0% 31.4%
3832766 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.70 41.0 3.32e-01 100.0% 31.7%
3606610 11.1.1.720 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IG_AIR9 0.68 46.0 3.84e-01 100.0% 41.0%
3211717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 38.0 4.66e-01 96.6% 91.4%
3265105 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.67 49.0 4.13e-01 100.0% 47.4%
5058314 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 50.0 4.16e-01 100.0% 47.0%
4397568 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.65 51.0 4.49e-01 100.0% 56.7%
5050775 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.65 46.0 3.75e-01 98.3% 39.1%
5054505 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.65 58.0 4.98e-01 100.0% 95.6%
3781 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.64 53.0 3.77e-01 96.6% 62.1%
3523136 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.62 43.0 2.71e-01 72.4% 75.3%
3942510 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.62 53.0 4.57e-01 100.0% 90.5%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.16e-01 96.6% 87.5%
4557537 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.61 52.0 4.59e-01 100.0% 66.7%
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.61 51.0 4.56e-01 100.0% 92.2%
3596155 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 41.0 3.32e-01 70.7% 92.2%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 52.0 4.57e-01 94.8% 64.7%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.61 51.0 4.67e-01 98.3% 78.8%
4623707 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 51.0 4.44e-01 100.0% 87.4%
5046850 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 50.0 4.48e-01 100.0% 68.9%
4034317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.93e-01 94.8% 87.3%
2028252 3986.2.1.1 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd 0.59 46.0 4.48e-01 98.3% 78.1%
3749060 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.58 51.0 4.62e-01 100.0% 86.3%
6198 221.1.1.17 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C 0.58 46.0 3.75e-01 100.0% 46.8%
2418726 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.57 42.0 3.05e-01 100.0% 28.7%
1003912 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.57 44.0 3.86e-01 100.0% 54.2%
4012961 221.17.1.0 ↗ a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 0.56 41.0 3.02e-01 100.0% 28.1%
150973 4967.1.1.5 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_3 0.56 45.0 3.20e-01 96.6% 55.1%
5025279 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 50.0 3.98e-01 100.0% 56.5%
3258059 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.56 49.0 4.54e-01 100.0% 93.3%
3846535 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.56 48.0 4.22e-01 100.0% 77.8%
3215161 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.21e-01 100.0% 66.7%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.55 39.0 4.15e-01 100.0% 100.0%
3595361 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.76e-01 100.0% 54.7%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.55 38.0 4.06e-01 98.3% 95.6%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.54 38.0 4.01e-01 100.0% 100.0%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 47.0 4.29e-01 100.0% 86.3%
3273123 3578.1.1.0 ↗ beta sandwiches › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE 0.54 48.0 3.74e-01 100.0% 53.2%
3988557 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.53 38.0 2.53e-01 79.3% 86.3%
3590261 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.53 39.0 3.81e-01 98.3% 73.5%
3930427 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 40.0 3.90e-01 100.0% 78.5%
4028716 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.51 42.0 3.25e-01 93.1% 59.3%
3406728 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.51 42.0 3.76e-01 100.0% 100.0%
3941506 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.50 34.0 2.14e-01 87.9% 12.2%
4941845 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 39.0 4.02e-01 98.3% 96.2%
3658946 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.50 42.0 3.78e-01 96.6% 83.5%