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ON856257.1__UVD41652.1__1PHSA12_0093__00082

Bact-Vir

ON856257.1__UVD41652.1__1PHSA12_0093__00082

Identity

Accession:
ON856257 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 308-490
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20441.4 best TerL_nuclease 83.1 2.90e-23 98.4% 61.5%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.72 63.0 6.31e-01 100.0% 89.4%
1kcfB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 53.0 4.92e-01 84.2% 75.4%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 42.0 5.04e-01 72.7% 97.6%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 42.0 4.86e-01 82.0% 91.7%
5b1hA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 30.0 3.96e-01 83.1% 91.2%
1h9cA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 30.0 3.80e-01 71.6% 85.8%
5ybwA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 29.0 3.85e-01 82.5% 89.8%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 42.0 3.46e-01 76.0% 82.1%
3ttcA03 3.30.420.360 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 34.0 4.18e-01 74.9% 91.7%
5cvcA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 28.0 3.72e-01 82.5% 89.7%
1p5jA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 28.0 3.71e-01 82.5% 90.6%
2xdqB04 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 29.0 3.98e-01 80.3% 100.0%
3okpA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 39.0 3.95e-01 74.3% 95.8%
6gyzA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.54 26.0 3.77e-01 75.4% 100.0%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 26.0 3.23e-01 86.3% 73.3%
3i3wA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.52 25.0 3.63e-01 74.3% 100.0%
1f21A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 38.0 4.14e-01 82.0% 90.1%
2h9aA02 3.40.50.11600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 32.0 3.77e-01 74.3% 90.5%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 28.0 3.51e-01 77.6% 89.0%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 26.0 2.89e-01 86.3% 59.2%
4ap5A02 3.40.50.11350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 37.0 3.80e-01 87.4% 79.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033330 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 1.00 99.0 9.18e-01 100.0% 85.1%
3947877 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.96 94.0 8.84e-01 100.0% 89.0%
3590721 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.96 92.0 8.67e-01 100.0% 85.7%
4010072 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.95 93.0 8.28e-01 100.0% 81.7%
4031863 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.94 92.0 8.36e-01 100.0% 83.9%
3587035 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.93 90.0 8.48e-01 100.0% 86.2%
2755869 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.91 88.0 8.09e-01 100.0% 84.2%
5083931 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.84 68.0 6.97e-01 100.0% 87.4%
5031041 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.81 70.0 6.87e-01 100.0% 84.1%
4975081 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.80 64.0 6.91e-01 96.7% 96.1%
5031052 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 71.0 6.82e-01 100.0% 87.8%
1949055 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.73 61.0 6.11e-01 100.0% 84.2%
4988089 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.73 64.0 6.36e-01 100.0% 88.9%
4951444 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.72 45.0 4.96e-01 83.6% 76.0%
4974990 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.72 60.0 6.22e-01 98.9% 91.4%
4972935 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 61.0 6.19e-01 98.9% 90.6%
4975080 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.71 60.0 6.05e-01 98.9% 88.1%
4545598 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.69 43.0 4.46e-01 84.2% 65.9%
4124524 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.66 47.0 4.58e-01 72.7% 98.5%
None 0.65 44.0 2.84e-01 78.7% 17.5%
4509605 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.63 43.0 4.91e-01 79.8% 91.4%
4947742 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.61 39.0 4.56e-01 81.4% 89.2%
4636438 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 38.0 4.55e-01 89.6% 96.7%
3734515 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 44.0 4.08e-01 76.5% 94.7%
3767654 2484.1.1.176 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.58 46.0 3.45e-01 83.6% 68.4%
4964197 7544.1.1.1 a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 0.57 44.0 3.91e-01 80.9% 99.6%
3229670 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.57 31.0 3.40e-01 83.1% 62.7%
3234917 2484.1.1.45 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.57 48.0 3.96e-01 91.3% 80.3%
4439294 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 37.0 4.38e-01 81.4% 96.0%
3233863 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 49.0 3.60e-01 91.3% 95.8%
3908854 2484.1.1.215 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.57 48.0 3.54e-01 90.2% 91.0%
4115185 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 36.0 4.16e-01 81.4% 89.2%
3220601 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 49.0 3.59e-01 93.4% 87.4%
3781214 2484.1.1.90 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C 0.55 46.0 4.23e-01 88.5% 79.0%
4931295 2007.1.14.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 0.54 34.0 4.21e-01 87.4% 100.0%
3243587 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.54 46.0 3.81e-01 90.7% 95.2%
3939751 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 46.0 3.44e-01 90.7% 91.4%
3192419 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.53 45.0 4.11e-01 90.2% 93.4%
3750635 2484.1.1.169 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.65e-01 86.3% 68.9%
3447047 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.52 45.0 3.64e-01 92.9% 69.1%
3471731 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 3.46e-01 82.5% 64.6%
3875879 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 3.98e-01 80.3% 81.1%
3781671 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.51 28.0 3.13e-01 83.1% 66.2%
3229203 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.51 46.0 3.40e-01 98.9% 98.1%
4938869 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.50 40.0 3.82e-01 82.0% 86.7%
3273995 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.50 39.0 3.47e-01 79.8% 77.7%
4900638 2007.1.14.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro 0.50 36.0 4.06e-01 85.2% 99.3%
D2 medium residues 113-249
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 129.3 2.50e-37 100.0% 68.2%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.60 47.0 4.51e-01 81.8% 79.7%
3p9dE01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 45.0 3.62e-01 97.1% 47.2%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 42.0 3.31e-01 88.3% 72.0%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 38.0 2.96e-01 75.9% 59.7%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 34.0 3.52e-01 73.0% 71.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030882 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.97 83.0 6.92e-01 87.6% 57.1%
3981280 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.73 62.0 6.13e-01 92.0% 89.7%
4032310 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.73 58.0 5.67e-01 84.7% 80.0%
4986458 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.70 61.0 6.27e-01 94.2% 100.0%
3941716 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.68 59.0 6.08e-01 94.2% 100.0%
4986459 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.68 59.0 5.73e-01 94.9% 93.5%
3963765 159.1.2.5 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.61 53.0 4.76e-01 94.9% 72.6%
4943950 3352.1.1.3 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT 0.60 48.0 3.41e-01 86.1% 96.6%
3225516 3238.1.1.1 alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF 0.58 51.0 4.11e-01 98.5% 70.9%
3942011 3950.1.1.1 alpha complex topology › Bacterial vitamin C transporter UlaA/SgaT › Bacterial vitamin C transporter UlaA/SgaT › Bacterial vitamin C transporter UlaA/SgaT › EIIC-GAT 0.53 45.0 3.22e-01 94.2% 86.3%
4960822 1075.5.1.8 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 0.52 38.0 3.11e-01 75.9% 69.0%
4886716 2498.5.1.1 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.52 40.0 3.28e-01 95.6% 43.1%
5081836 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.51 37.0 3.35e-01 75.9% 95.3%
4607845 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 35.0 2.66e-01 70.1% 49.9%
D3 medium residues 250-307
PDB