←Back to structures

ON857934.1__UVN13606.1__FBPa24_0007__00007

Bact-Vir

ON857934.1__UVN13606.1__FBPa24_0007__00007

Identity

Accession:
ON857934 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Pbunavirus› Pseudomonas_phage_vB_PaeM_FBPa24

TaxID: 2945963

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-140
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 47.2 2.70e-12 96.4% 51.6%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 58.0 5.15e-01 97.8% 58.9%
4zpxA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 54.0 4.54e-01 87.1% 81.1%
4akgA12 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 50.0 5.34e-01 86.3% 95.7%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 57.0 5.05e-01 96.4% 84.4%
3bosB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 51.0 4.86e-01 96.4% 72.8%
4tvsA00 3.40.50.12190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 55.0 4.71e-01 98.6% 75.0%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 53.0 3.96e-01 94.2% 77.3%
3eccA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 4.71e-01 87.8% 83.3%
7xjrA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 49.0 3.93e-01 95.7% 95.8%
3epnB01 3.20.20.540 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Radical SAM ThiC family, central domain 0.56 48.0 3.77e-01 93.5% 77.5%
4jgiB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.56 39.0 4.05e-01 87.1% 77.0%
1p5jA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 31.0 3.55e-01 73.4% 74.0%
6xo2A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 32.0 3.64e-01 76.3% 73.3%
4idhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 4.41e-01 100.0% 80.8%
3jwhA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 47.0 4.29e-01 94.2% 93.7%
1p0kA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 47.0 3.64e-01 92.1% 96.7%
3bc9A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 47.0 3.77e-01 95.0% 83.3%
1y7lA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 31.0 3.54e-01 74.1% 73.8%
7ntgA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 44.0 4.07e-01 85.6% 71.2%
5d84A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 33.0 3.57e-01 75.5% 72.1%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.54 43.0 4.09e-01 84.2% 85.4%
4nl4H03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 4.24e-01 96.4% 81.1%
3ieiA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.55e-01 92.8% 87.1%
1sc6A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 35.0 3.63e-01 92.1% 69.2%
3sr7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 45.0 3.63e-01 91.4% 98.2%
1k77A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 45.0 3.75e-01 94.2% 83.0%
2eklA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 34.0 3.65e-01 95.7% 74.4%
3bmxA02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.53 45.0 3.86e-01 92.8% 91.5%
5z5cA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 31.0 3.44e-01 75.5% 72.2%
4c6sA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.53 39.0 3.90e-01 92.1% 76.8%
2bvdA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 45.0 3.68e-01 95.7% 96.4%
2chrA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 43.0 3.81e-01 89.9% 60.9%
3fniA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 41.0 4.05e-01 97.8% 77.9%
5swuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 41.0 3.46e-01 87.1% 56.6%
2oogD00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.51 44.0 3.62e-01 95.7% 93.3%
3vz3A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 37.0 3.03e-01 74.8% 65.0%
1vecA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.89e-01 95.7% 79.6%
3qfeB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 3.57e-01 100.0% 94.0%
7qccA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 38.0 3.49e-01 80.6% 95.8%
2yx0A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 43.0 3.32e-01 94.2% 81.8%
1tqxA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 45.0 3.89e-01 100.0% 91.9%
3kkeB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 40.0 4.01e-01 92.8% 83.3%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.50 40.0 3.83e-01 83.5% 80.4%
1a5kC02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 44.0 3.29e-01 99.3% 99.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253892 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.72 58.0 5.13e-01 98.6% 60.5%
5029777 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.71 59.0 4.84e-01 98.6% 48.6%
4959586 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.71 61.0 4.80e-01 98.6% 45.5%
3954608 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.70 61.0 4.88e-01 98.6% 49.2%
5011495 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 59.0 5.22e-01 100.0% 63.0%
5081314 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 58.0 4.69e-01 98.6% 47.3%
3256248 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.70 43.0 4.34e-01 74.8% 60.7%
3254493 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.70 64.0 5.17e-01 100.0% 73.5%
5035042 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.69 61.0 4.86e-01 100.0% 48.0%
5022020 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.69 60.0 4.81e-01 98.6% 48.7%
3361413 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 56.0 4.87e-01 87.1% 69.5%
None — 0.67 55.0 5.28e-01 87.1% 76.9%
2810781 8001.1.1.1 ↗ alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C 0.67 55.0 4.69e-01 98.6% 54.8%
5006563 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.67 55.0 4.45e-01 87.1% 71.0%
3469175 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 54.0 4.56e-01 87.1% 71.3%
3598741 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 59.0 4.94e-01 97.1% 77.9%
4944156 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 54.0 4.76e-01 87.1% 74.0%
None — 0.66 54.0 4.88e-01 87.8% 65.3%
4926850 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.65 52.0 5.05e-01 100.0% 76.1%
4314819 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.64 54.0 4.86e-01 98.6% 65.1%
5023501 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.64 57.0 4.66e-01 97.8% 67.3%
4998586 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 52.0 4.52e-01 100.0% 57.1%
5053049 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.63 57.0 5.16e-01 97.8% 81.6%
None — 0.63 54.0 4.95e-01 100.0% 70.6%
4661580 2004.1.1.584 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat, Mg_chelatase 0.62 55.0 4.71e-01 96.4% 88.4%
5034518 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.62 51.0 4.44e-01 87.8% 62.3%
3954129 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.62 56.0 4.67e-01 100.0% 73.9%
3839782 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.62 56.0 4.58e-01 100.0% 69.6%
4318504 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.62 56.0 5.20e-01 97.8% 85.9%
3963614 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.62 56.0 4.52e-01 100.0% 66.7%
3281544 2004.1.1.584 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat, Mg_chelatase 0.61 54.0 4.52e-01 97.1% 71.4%
None — 0.61 53.0 3.86e-01 93.5% 79.5%
3981677 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.61 54.0 4.50e-01 97.8% 60.4%
4069782 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 56.0 4.48e-01 100.0% 76.2%
5017686 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.60 53.0 4.38e-01 97.1% 80.0%
4030223 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.60 54.0 4.38e-01 100.0% 55.6%
4016634 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 53.0 4.46e-01 97.8% 67.9%
3481498 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.59 53.0 4.24e-01 100.0% 51.2%
5003899 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.58 52.0 4.20e-01 100.0% 54.3%
5012900 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.58 52.0 4.37e-01 100.0% 64.2%
3309390 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.58 40.0 4.17e-01 71.2% 76.2%
3594143 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 49.0 3.76e-01 93.5% 72.4%
3711143 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 51.0 3.71e-01 96.4% 42.1%
5048331 2007.6.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C 0.57 40.0 3.69e-01 73.4% 62.8%
4954760 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 48.0 3.77e-01 92.1% 77.9%
3610966 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 51.0 4.08e-01 100.0% 56.4%
3970732 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.56 37.0 3.89e-01 84.9% 72.9%
5045359 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.56 47.0 3.56e-01 92.8% 91.4%
4301878 2004.1.1.606 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30321 0.55 50.0 4.16e-01 98.6% 84.2%
5054417 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.55 32.0 3.36e-01 74.8% 60.8%
4934053 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.55 31.0 2.91e-01 74.1% 42.4%
3840812 2003.1.5.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.55 49.0 3.68e-01 97.1% 83.2%
4931238 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 45.0 3.61e-01 87.8% 86.7%
5049232 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 46.0 3.68e-01 93.5% 86.2%
4345464 2002.1.1.28 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRAI 0.54 47.0 4.03e-01 95.7% 92.0%
3003998 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 48.0 4.10e-01 99.3% 95.2%
5025716 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.53 31.0 3.04e-01 74.1% 49.7%
5056543 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 45.0 3.69e-01 89.9% 97.6%
5035957 7597.1.1.4 ↗ a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain › GxGYxYP_N_3rd 0.53 30.0 3.45e-01 81.3% 77.9%
4995727 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 45.0 3.78e-01 95.7% 98.8%
3289549 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.52 32.0 3.06e-01 75.5% 50.0%
2483114 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.52 30.0 2.91e-01 75.5% 46.1%
3386243 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.52 40.0 3.92e-01 83.5% 95.5%
3289646 2007.9.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.51 37.0 3.70e-01 92.8% 72.1%
5076028 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.51 36.0 2.97e-01 73.4% 63.0%
4180338 7529.1.1.3 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.51 40.0 3.80e-01 83.5% 97.0%
4040222 2007.1.2.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Glyco_tran_WecG 0.51 36.0 3.92e-01 71.9% 91.8%
4408656 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.51 45.0 3.48e-01 97.8% 78.7%
4974967 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.51 43.0 3.56e-01 92.1% 82.4%
4993769 7597.1.1.0 ↗ a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.51 28.0 3.51e-01 87.1% 92.5%
10600 7562.1.1.1 ↗ a/b three-layered sandwiches › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain › Thiamin pyrophosphokinase, catalytic domain › TPK_catalytic 0.50 37.0 3.45e-01 75.5% 89.9%
D2 high residues 203-290
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.71e-01 98.9% 97.3%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 5.21e-01 93.2% 90.5%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 5.16e-01 100.0% 80.6%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.16e-01 97.7% 50.4%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 5.03e-01 97.7% 82.0%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.66e-01 86.4% 75.0%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.19e-01 98.9% 92.5%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.64 50.0 5.25e-01 97.7% 94.9%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.36e-01 100.0% 62.2%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 41.0 4.70e-01 86.4% 95.0%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.76e-01 100.0% 87.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 5.03e-01 100.0% 84.8%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.93e-01 88.6% 100.0%
3h4sE00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 41.0 4.00e-01 92.0% 62.5%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.86e-01 96.6% 91.1%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.61 47.0 4.86e-01 97.7% 91.3%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 44.0 4.27e-01 90.9% 67.3%
2ly1A01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.61 45.0 4.72e-01 97.7% 89.9%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.59 42.0 4.64e-01 76.1% 94.3%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.87e-01 98.9% 94.0%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.98e-01 100.0% 54.1%
2pbiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.60e-01 96.6% 87.5%
1uu1B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 37.0 3.30e-01 90.9% 47.3%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.53 41.0 3.95e-01 100.0% 72.0%
2qmaA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 40.0 3.66e-01 88.6% 60.8%
5ljmA00 1.20.58.2190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 45.0 3.52e-01 100.0% 45.3%
1aroP03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.18e-01 76.1% 86.7%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.67e-01 100.0% 57.2%
3madA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 37.0 3.30e-01 88.6% 52.7%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.51 38.0 3.94e-01 88.6% 85.4%
3euhD01 1.10.10.2250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 35.0 3.74e-01 88.6% 90.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3681025 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 52.0 5.95e-01 86.4% 98.5%
3330042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 51.0 5.81e-01 89.8% 96.9%
3739748 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.51e-01 97.7% 85.9%
3405902 101.1.2.177 ↗ alpha arrays › HTH › HTH › winged helix domain › MARF1_LOTUS 0.70 54.0 5.64e-01 100.0% 91.3%
5046672 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.16e-01 100.0% 67.0%
3720602 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.69 54.0 5.67e-01 100.0% 93.8%
4950232 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.49e-01 100.0% 85.6%
3405664 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 46.0 4.87e-01 87.5% 81.3%
3909626 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.66 41.0 4.68e-01 85.2% 84.6%
4982701 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.66 51.0 5.22e-01 97.7% 85.9%
5050407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 4.82e-01 100.0% 69.5%
5028531 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 5.02e-01 100.0% 78.9%
2056399 101.1.2.213 ↗ alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.66 48.0 5.14e-01 92.0% 89.5%
5011846 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 5.17e-01 98.9% 94.3%
4031678 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.65 46.0 5.17e-01 84.1% 100.0%
3408302 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 5.07e-01 100.0% 100.0%
4979487 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.49e-01 100.0% 55.0%
5012783 101.1.9.134 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.64 37.0 4.21e-01 75.0% 76.9%
3499387 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.64 54.0 5.06e-01 100.0% 75.5%
4126917 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.91e-01 100.0% 84.7%
5049563 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.63 41.0 2.56e-01 90.9% 10.9%
3737673 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.62 49.0 4.72e-01 100.0% 75.0%
4058826 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.62 43.0 4.42e-01 76.1% 74.1%
5066770 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.62 48.0 4.69e-01 95.5% 76.8%
5076211 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.84e-01 93.2% 73.6%
3620820 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.40e-01 100.0% 55.9%
5018467 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.70e-01 100.0% 79.6%
3633928 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 41.0 4.68e-01 85.2% 100.0%
5053109 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 3.81e-01 90.9% 46.2%
3933695 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 5.39e-01 96.6% 100.0%
4957075 101.1.9.134 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.61 40.0 3.85e-01 84.1% 57.1%
4679974 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.61 45.0 4.81e-01 90.9% 93.3%
4217184 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.61 42.0 4.50e-01 87.5% 85.3%
3899864 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.99e-01 100.0% 88.6%
5048181 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.60 51.0 4.16e-01 96.6% 65.9%
3670739 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.59 52.0 4.33e-01 100.0% 63.7%
4188749 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.59 47.0 4.85e-01 100.0% 96.2%
4073708 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 42.0 4.20e-01 76.1% 73.3%
3814341 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 32.0 3.81e-01 77.3% 83.6%
4055520 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 42.0 4.32e-01 76.1% 78.8%
3924895 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 38.0 4.35e-01 88.6% 100.0%
3585425 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.58 50.0 4.88e-01 96.6% 96.8%
167429 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.57 46.0 3.98e-01 100.0% 54.1%
3878277 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.57 44.0 4.33e-01 90.9% 76.8%
3420394 108.1.1.14 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_assoc_2 0.57 43.0 4.32e-01 87.5% 77.8%
3982680 101.1.2.159 ↗ alpha arrays › HTH › HTH › winged helix domain › BsuBI_PstI_RE_N 0.57 49.0 4.19e-01 100.0% 64.7%
3405904 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.78e-01 100.0% 95.0%
3593580 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 48.0 4.52e-01 98.9% 97.3%
3648085 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 36.0 3.69e-01 80.7% 69.4%
3902818 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 46.0 4.46e-01 100.0% 84.0%
3335847 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.54 46.0 3.14e-01 96.6% 50.7%
4940125 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 35.0 2.91e-01 97.7% 35.4%
4961222 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.52 38.0 3.87e-01 93.2% 81.2%
3934202 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 38.0 3.27e-01 78.4% 71.7%
5068444 242.4.1.2 ↗ a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.51 44.0 3.86e-01 97.7% 68.6%
D3 medium residues 141-199
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3htkC01 1.20.120.1010 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 49.0 3.29e-01 71.2% 47.0%