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ON857934.1__UVN13634.1__FBPa24_0035__00035
Bact-VirON857934.1__UVN13634.1__FBPa24_0035__00035
Identity
- Accession:
- ON857934 ↗
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Lindbergviridae›
Pbunavirus›
Pseudomonas_phage_vB_PaeM_FBPa24
TaxID: 2945963
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 323-372
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 53.0 | 3.64e-01 | 84.0% | 25.4% |
| 1w0pA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 49.0 | 3.39e-01 | 84.0% | 23.5% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 45.0 | 4.21e-01 | 74.0% | 71.4% |
| 2aq5A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 46.0 | 2.80e-01 | 78.0% | 12.8% |
| 5esyA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.64 | 44.0 | 2.92e-01 | 74.0% | 24.3% |
| 1uasA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 46.0 | 3.88e-01 | 80.0% | 97.7% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.63 | 47.0 | 2.98e-01 | 84.0% | 17.5% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.63 | 47.0 | 2.95e-01 | 84.0% | 19.2% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.63 | 48.0 | 2.98e-01 | 84.0% | 16.2% |
| 3f7wA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 42.0 | 3.53e-01 | 74.0% | 80.2% |
| 2gu3A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 49.0 | 4.53e-01 | 92.0% | 70.8% |
| 2b1xA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 42.0 | 3.22e-01 | 80.0% | 73.0% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.58 | 38.0 | 3.56e-01 | 70.0% | 57.6% |
| 5g5gB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.57 | 42.0 | 3.50e-01 | 80.0% | 56.4% |
| 3vcaA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 42.0 | 3.27e-01 | 82.0% | 73.9% |
| 7ylsB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 41.0 | 3.32e-01 | 80.0% | 88.0% |
| 3hbkA00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.56 | 45.0 | 3.00e-01 | 94.0% | 48.9% |
| 2p18A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 47.0 | 3.00e-01 | 100.0% | 35.3% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.56 | 40.0 | 3.44e-01 | 80.0% | 45.5% |
| 1amiA04 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.55 | 40.0 | 2.71e-01 | 84.0% | 83.3% |
| 1mmuA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 45.0 | 2.83e-01 | 100.0% | 88.5% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 2.66e-01 | 80.0% | 21.5% |
| 7q04F01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.53 | 38.0 | 3.10e-01 | 80.0% | 88.1% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 36.0 | 2.81e-01 | 70.0% | 41.5% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 35.0 | 2.86e-01 | 72.0% | 58.8% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.52 | 39.0 | 2.35e-01 | 88.0% | 54.4% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.55e-01 | 78.0% | 82.5% |
| 2iiiA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 39.0 | 3.08e-01 | 90.0% | 59.2% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 37.0 | 2.97e-01 | 86.0% | 41.2% |
| 5ih0A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 3.34e-01 | 92.0% | 88.2% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.50 | 41.0 | 3.35e-01 | 96.0% | 59.2% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4104221 | 5.1.7.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR, Sortilin-Vps10 | 0.71 | 53.0 | 3.02e-01 | 84.0% | 8.2% |
| 4212114 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.68 | 59.0 | 4.07e-01 | 100.0% | 40.0% |
| 3589569 | 243.3.1.13 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 | 0.68 | 48.0 | 4.58e-01 | 76.0% | 73.3% |
| 4929797 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.67 | 51.0 | 4.85e-01 | 86.0% | 71.2% |
| 3212890 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.67 | 45.0 | 2.89e-01 | 78.0% | 14.0% |
| 3585414 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.66 | 50.0 | 3.98e-01 | 86.0% | 40.0% |
| 3642733 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.66 | 49.0 | 3.07e-01 | 84.0% | 13.8% |
| 3215376 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.66 | 47.0 | 2.80e-01 | 78.0% | 10.9% |
| 3233815 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.65 | 44.0 | 2.87e-01 | 78.0% | 14.6% |
| 3621408 | 5.1.4.74 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N | 0.63 | 48.0 | 2.95e-01 | 84.0% | 12.9% |
| 3291683 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.62 | 44.0 | 3.71e-01 | 78.0% | 46.7% |
| 2476874 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 41.0 | 3.42e-01 | 70.0% | 38.0% |
| 3994644 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 46.0 | 2.56e-01 | 84.0% | 5.2% |
| 3616330 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.61 | 52.0 | 3.90e-01 | 100.0% | 45.2% |
| 3960877 | 295.1.1.27 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 | 0.61 | 46.0 | 4.15e-01 | 82.0% | 68.6% |
| 3505083 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.61 | 45.0 | 2.76e-01 | 82.0% | 11.5% |
| 4380331 | 295.1.1.27 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 | 0.60 | 44.0 | 4.02e-01 | 80.0% | 65.7% |
| 3452428 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.60 | 42.0 | 2.64e-01 | 80.0% | 39.1% |
| 3466771 | 375.3.1.2 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL | 0.60 | 42.0 | 4.13e-01 | 92.0% | 69.1% |
| 3675483 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 42.0 | 2.55e-01 | 84.0% | 9.7% |
| 3400053 | 206.1.1.98 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1, APH | 0.59 | 42.0 | 2.78e-01 | 78.0% | 41.7% |
| 3174990 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 43.0 | 2.87e-01 | 80.0% | 30.5% |
| 3805791 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.59 | 42.0 | 2.66e-01 | 80.0% | 43.5% |
| 4609923 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.59 | 49.0 | 3.70e-01 | 100.0% | 45.2% |
| 3438842 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.59 | 43.0 | 2.66e-01 | 80.0% | 40.9% |
| 3706524 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.58 | 40.0 | 2.55e-01 | 74.0% | 13.2% |
| 5016556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 42.0 | 3.57e-01 | 80.0% | 45.6% |
| 3743052 | 5.1.4.78 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta | 0.58 | 42.0 | 2.50e-01 | 82.0% | 9.8% |
| 3238369 | 12.1.1.88 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 | 0.57 | 43.0 | 4.29e-01 | 92.0% | 81.1% |
| 3958695 | 3484.1.1.2 ↗ | a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 | 0.55 | 39.0 | 2.89e-01 | 80.0% | 25.6% |
| 4965528 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.55 | 38.0 | 2.55e-01 | 74.0% | 28.0% |
| 3587919 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.54 | 45.0 | 2.82e-01 | 100.0% | 88.7% |
| 3376285 | 706.1.1.4 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › BRX | 0.54 | 37.0 | 3.73e-01 | 76.0% | 84.9% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.53 | 37.0 | 3.45e-01 | 74.0% | 83.1% |
| 3346566 | 1.1.7.85 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › BRX | 0.53 | 38.0 | 3.73e-01 | 80.0% | 83.6% |
| 3471746 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.53 | 37.0 | 2.70e-01 | 78.0% | 90.8% |
| 3827622 | 12.2.1.7 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › BRX | 0.53 | 38.0 | 3.65e-01 | 82.0% | 78.3% |
D2
high
residues 383-451
Domain cluster:
rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00265__D133-216
D3
medium
residues 182-275
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 41.0 | 2.94e-01 | 71.3% | 77.7% |
| 4a0tA01 | 6.20.80.10 | Special › Other non-globular › Glycosyl hydrolase fold › | 0.59 | 38.0 | 4.47e-01 | 76.6% | 100.0% |
| 2x3hA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 46.0 | 2.91e-01 | 90.4% | 15.9% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 40.0 | 2.66e-01 | 73.4% | 92.4% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.54 | 39.0 | 3.19e-01 | 75.5% | 46.4% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 35.0 | 2.83e-01 | 71.3% | 53.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3815404 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 43.0 | 3.05e-01 | 90.4% | 63.3% |
| 3314317 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 42.0 | 2.52e-01 | 89.4% | 25.7% |
| 3486624 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.51 | 41.0 | 2.83e-01 | 92.6% | 66.4% |
| 4974812 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 39.0 | 2.75e-01 | 84.0% | 70.2% |
| 3594372 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 38.0 | 2.47e-01 | 86.2% | 37.6% |