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ON911538.2__UVB02955.1__IVIADoCa1_32__00032

Bact-Vir

ON911538.2__UVB02955.1__IVIADoCa1_32__00032

Identity

Accession:
ON911538 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Septimatrevirus› Xanthomonas_phage_vB_Xar_IVIA-DoCa1

TaxID: 2970490

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-63
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.77 49.0 5.08e-01 95.9% 69.6%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.75 53.0 3.67e-01 100.0% 23.6%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 45.0 4.16e-01 100.0% 51.5%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 51.0 3.77e-01 100.0% 32.5%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 49.0 2.86e-01 100.0% 9.4%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.62 46.0 4.46e-01 98.0% 70.2%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 52.0 3.99e-01 98.0% 92.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.60e-01 98.0% 74.6%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 47.0 4.08e-01 89.8% 56.6%
3e0jA01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.59 48.0 2.98e-01 91.8% 86.6%
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 49.0 4.18e-01 98.0% 66.3%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 50.0 3.94e-01 98.0% 95.2%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 46.0 3.03e-01 87.8% 65.9%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 46.0 2.97e-01 91.8% 37.6%
4kfuA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.16e-01 93.9% 99.5%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 50.0 3.74e-01 100.0% 51.6%
1jw9B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 44.0 2.84e-01 85.7% 32.5%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 46.0 3.97e-01 89.8% 58.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 50.0 4.39e-01 100.0% 89.0%
5ff5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 2.89e-01 87.8% 35.3%
2zbwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 50.0 3.73e-01 100.0% 53.7%
4n30A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 44.0 3.03e-01 89.8% 85.2%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 44.0 4.28e-01 91.8% 77.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 4.46e-01 100.0% 72.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.32e-01 98.0% 95.7%
4g3cA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 3.54e-01 98.0% 59.5%
4yy8A02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 46.0 2.92e-01 100.0% 45.6%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 43.0 2.69e-01 87.8% 93.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 47.0 4.11e-01 100.0% 65.8%
4nh0A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 2.89e-01 93.9% 92.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.12e-01 98.0% 94.7%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 42.0 3.35e-01 91.8% 82.9%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.32e-01 93.9% 36.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 48.0 4.07e-01 100.0% 77.5%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.56e-01 100.0% 52.1%
4o5lL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.45e-01 91.8% 90.4%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 44.0 4.16e-01 95.9% 75.8%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 47.0 4.25e-01 98.0% 78.5%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.53 31.0 2.72e-01 71.4% 31.6%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.27e-01 100.0% 53.9%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.69e-01 95.9% 22.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.52 39.0 4.00e-01 87.8% 85.4%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 43.0 3.96e-01 93.9% 89.4%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.52 41.0 2.53e-01 93.9% 28.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 41.0 2.65e-01 93.9% 53.5%
4f9zA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 38.0 3.14e-01 87.8% 77.7%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.00e-01 100.0% 79.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002958 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.73 50.0 4.98e-01 98.0% 70.0%
5013926 375.8.1.8 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › CPxCG_zf 0.71 48.0 5.60e-01 91.8% 100.0%
3908665 4.1.1.227 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.68 51.0 4.18e-01 100.0% 43.2%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 48.0 4.73e-01 100.0% 74.1%
3991339 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.64 54.0 3.18e-01 91.8% 31.0%
3488731 5.1.3.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.64 51.0 3.07e-01 93.9% 24.8%
3948516 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 44.0 4.03e-01 93.9% 55.4%
3499027 246.2.1.7 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B 0.63 48.0 2.86e-01 83.7% 77.3%
3405033 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 50.0 2.97e-01 91.8% 20.4%
4121733 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.60 48.0 2.94e-01 95.9% 24.0%
3301833 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.60 48.0 2.97e-01 93.9% 17.4%
3706802 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.60 46.0 2.90e-01 93.9% 27.9%
3603442 101.8.1.1 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.59 52.0 2.94e-01 100.0% 24.2%
3403385 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.59 48.0 2.95e-01 93.9% 25.8%
None — 0.59 47.0 2.62e-01 93.9% 7.5%
3239375 5.1.4.337 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_CDC20-Fz 0.58 46.0 2.76e-01 89.8% 24.0%
1108143 3772.1.1.1 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.58 44.0 3.24e-01 83.7% 34.1%
3785552 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.58 48.0 3.57e-01 98.0% 40.7%
3845875 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 47.0 2.86e-01 93.9% 24.6%
100072 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.57 44.0 2.90e-01 85.7% 28.6%
3588379 375.1.1.90 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.57 47.0 4.26e-01 89.8% 81.5%
4823230 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 49.0 4.20e-01 100.0% 72.8%
5074927 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.56 42.0 2.69e-01 83.7% 31.7%
3412668 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 3.51e-01 93.9% 71.7%
4959885 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.56 47.0 4.02e-01 100.0% 60.0%
5050109 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.56 46.0 3.90e-01 95.9% 57.6%
3480132 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.55 46.0 2.64e-01 98.0% 11.2%
4952318 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 43.0 3.95e-01 85.7% 73.8%
5045010 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.55 42.0 2.72e-01 85.7% 35.0%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 43.0 4.23e-01 95.9% 80.0%
5032137 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.54 45.0 4.07e-01 95.9% 68.6%
4952914 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 43.0 4.06e-01 85.7% 81.4%
3954203 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 44.0 3.86e-01 91.8% 70.7%
4015718 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 42.0 4.01e-01 89.8% 90.0%
4278171 375.1.1.41 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 0.54 44.0 4.14e-01 89.8% 95.0%
4952724 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 44.0 3.24e-01 89.8% 40.0%
5054721 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.53 42.0 2.76e-01 91.8% 40.8%
3670792 243.3.1.67 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.53 45.0 4.11e-01 93.9% 81.5%
2137275 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 34.0 3.34e-01 100.0% 54.2%
3251342 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 42.0 3.26e-01 93.9% 67.5%
4969758 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.52 42.0 3.54e-01 93.9% 54.4%
4971601 241.14.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.52 43.0 3.84e-01 93.9% 80.0%
1886377 375.1.1.41 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 0.52 43.0 4.06e-01 91.8% 98.3%
5064802 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 42.0 3.51e-01 93.9% 88.9%
4406666 76.1.1.1 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.51 44.0 3.04e-01 100.0% 77.7%
5041097 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.51 41.0 4.02e-01 91.8% 90.9%
4137758 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.51 37.0 3.77e-01 91.8% 84.0%
3378386 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.50 43.0 2.67e-01 98.0% 71.8%
4193685 76.1.1.1 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.50 42.0 2.89e-01 100.0% 63.1%