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ON922990.1__UUW39863.1__VP14_176__00176

Bact-Vir

ON922990.1__UUW39863.1__VP14_176__00176

Identity

Accession:
ON922990 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_VPMCC14

TaxID: 2968382

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 42.0 4.03e-01 80.0% 61.6%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 40.0 4.19e-01 98.8% 77.3%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.76e-01 80.0% 76.7%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 44.0 3.61e-01 81.2% 80.5%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 43.0 4.06e-01 98.8% 63.0%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 39.0 3.59e-01 98.8% 51.3%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 42.0 2.92e-01 78.8% 32.4%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.56 42.0 4.04e-01 100.0% 70.0%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 40.0 3.92e-01 94.1% 71.4%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.84e-01 95.3% 77.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.57e-01 82.4% 65.6%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.52 45.0 4.23e-01 100.0% 78.3%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.69e-01 90.6% 99.2%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.58e-01 100.0% 76.4%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.77e-01 95.3% 83.2%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.95e-01 87.1% 88.0%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.66e-01 95.3% 75.6%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.73e-01 97.6% 76.6%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.45e-01 96.5% 51.2%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 42.0 3.63e-01 92.9% 75.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3853571 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.61 50.0 4.82e-01 100.0% 78.9%
3801304 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 41.0 3.51e-01 98.8% 42.9%
3952792 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 43.0 3.61e-01 80.0% 73.3%
3955267 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.58 43.0 3.73e-01 80.0% 82.1%
3750819 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 41.0 3.59e-01 98.8% 50.0%
3777334 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 40.0 3.36e-01 78.8% 66.0%
3288440 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.54 44.0 3.73e-01 89.4% 77.9%
3503123 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.54 48.0 4.32e-01 100.0% 70.8%
3933782 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 40.0 4.09e-01 81.2% 96.5%
3754415 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 41.0 3.39e-01 83.5% 64.6%
3389772 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.53 46.0 3.93e-01 100.0% 82.1%
3242230 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 3.14e-01 95.3% 34.4%
3710203 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 36.0 2.34e-01 76.5% 96.4%
3791839 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 39.0 4.04e-01 92.9% 88.7%
3745663 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.51 44.0 3.55e-01 100.0% 54.3%
3246120 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 42.0 3.38e-01 97.6% 59.3%
1066273 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.50 42.0 3.63e-01 92.9% 75.6%
3178505 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.50 41.0 3.76e-01 91.8% 82.6%
3221377 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.50 43.0 4.00e-01 100.0% 86.1%
3288437 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.50 44.0 3.69e-01 100.0% 85.3%