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ON950054.1__UXQ88823.1__X__00072

Bact-Vir

ON950054.1__UXQ88823.1__X__00072

Identity

Accession:
ON950054 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-43
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.72 59.0 3.65e-01 92.3% 18.2%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 59.0 5.41e-01 97.4% 84.9%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 4.66e-01 100.0% 50.0%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 56.0 4.77e-01 92.3% 59.4%
3pm6A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 49.0 2.98e-01 92.3% 44.9%
1x3zA03 1.10.1740.90 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.59 45.0 3.77e-01 100.0% 44.3%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.59 52.0 4.54e-01 100.0% 84.7%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 49.0 4.14e-01 94.9% 75.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3362021 397.3.1.0 few secondary structure elements › Toxic hairpin › Pollen allergen ole e 6 › Pollen allergen ole e 6 0.82 64.0 6.62e-01 97.4% 97.1%
3586327 101.1.8.5 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topo_C_assoc 0.78 62.0 4.73e-01 94.9% 38.0%
3998933 101.1.2.160 alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.74 64.0 5.74e-01 97.4% 69.1%
4996616 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.34e-01 97.4% 66.1%
3378219 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.71 58.0 4.14e-01 92.3% 36.5%
3320952 2006.1.4.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 0.69 57.0 4.05e-01 100.0% 31.1%
4939237 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.64 51.0 4.53e-01 100.0% 60.0%
3375611 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 46.0 4.42e-01 100.0% 70.0%
3482354 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.62 52.0 3.47e-01 97.4% 24.5%
4499267 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 3.15e-01 92.3% 24.0%
3298325 3846.1.1.0 alpha bundles › IcmR › IcmR › IcmR 0.57 47.0 4.46e-01 94.9% 86.7%
3852430 109.1.1.1 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.55 42.0 2.84e-01 97.4% 76.2%
D2 medium residues 47-90
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.76 62.0 5.97e-01 93.2% 94.0%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.68 50.0 3.83e-01 100.0% 32.7%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 59.0 4.84e-01 100.0% 100.0%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 58.0 4.99e-01 100.0% 100.0%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 45.0 3.11e-01 70.5% 100.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 56.0 4.38e-01 100.0% 60.6%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.66 54.0 4.40e-01 100.0% 55.2%
2o8qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 50.0 3.72e-01 100.0% 31.1%
2j3lA03 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.65 55.0 3.90e-01 100.0% 55.1%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 54.0 3.55e-01 100.0% 27.1%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.60 48.0 3.76e-01 100.0% 41.4%
1hxmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 3.73e-01 100.0% 51.2%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.60 52.0 4.38e-01 100.0% 63.2%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 3.80e-01 95.5% 45.9%
2lc1A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 50.0 3.96e-01 100.0% 93.0%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.59 47.0 4.02e-01 97.7% 78.0%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.05e-01 100.0% 52.4%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 47.0 3.86e-01 93.2% 95.7%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 50.0 3.56e-01 100.0% 32.3%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 44.0 3.83e-01 100.0% 51.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 46.0 3.27e-01 100.0% 48.5%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.43e-01 95.5% 70.2%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.57 39.0 2.98e-01 70.5% 40.5%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 3.48e-01 97.7% 42.0%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.72e-01 100.0% 47.8%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 44.0 3.98e-01 95.5% 97.0%
1w1oA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 48.0 3.44e-01 97.7% 33.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 42.0 3.61e-01 97.7% 57.6%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 39.0 3.19e-01 97.7% 35.2%
1wgoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.61e-01 100.0% 45.5%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.55 43.0 2.70e-01 100.0% 37.3%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 43.0 3.82e-01 100.0% 100.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 45.0 3.63e-01 97.7% 90.4%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 43.0 3.14e-01 100.0% 38.7%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.19e-01 100.0% 61.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.18e-01 100.0% 41.6%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 40.0 3.44e-01 100.0% 85.9%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.00e-01 97.7% 66.0%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.08e-01 100.0% 98.5%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.08e-01 100.0% 41.6%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.50 43.0 3.13e-01 100.0% 37.6%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 2.95e-01 100.0% 31.8%
3o4lD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.13e-01 97.7% 61.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.83 72.0 7.15e-01 95.5% 100.0%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.81 71.0 6.86e-01 100.0% 98.0%
3264847 2492.1.1.36 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.81 68.0 4.38e-01 95.5% 22.9%
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.81 70.0 6.58e-01 100.0% 92.7%
4623707 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.78 67.0 5.26e-01 100.0% 60.0%
4669741 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.77 65.0 5.16e-01 100.0% 53.7%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.77 65.0 5.26e-01 100.0% 56.7%
4949204 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.76 65.0 4.17e-01 100.0% 21.1%
3942510 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.76 64.0 5.08e-01 100.0% 53.7%
4139949 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.75 57.0 5.93e-01 93.2% 95.0%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.74 62.0 6.01e-01 100.0% 96.0%
4958689 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.74 63.0 5.76e-01 100.0% 75.0%
4268493 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.72 57.0 5.70e-01 95.5% 86.7%
4949196 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.69 60.0 5.43e-01 100.0% 95.0%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.69 55.0 4.07e-01 100.0% 34.8%
5007155 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.68 57.0 5.73e-01 97.7% 93.3%
3535929 386.1.1.248 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.68 58.0 3.89e-01 100.0% 26.9%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.66 59.0 5.88e-01 100.0% 97.8%
1003912 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.66 54.0 4.40e-01 100.0% 55.2%
3400735 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.66 51.0 4.93e-01 97.7% 76.4%
3414064 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.65 51.0 4.86e-01 100.0% 76.4%
3415578 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 51.0 4.99e-01 95.5% 82.0%
3987692 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.62 52.0 4.63e-01 100.0% 65.7%
3937161 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.09e-01 100.0% 78.9%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.61 47.0 4.42e-01 93.2% 75.0%
5040784 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.61 51.0 4.95e-01 100.0% 100.0%
4106367 379.1.1.1 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.60 47.0 4.60e-01 100.0% 84.9%
3400462 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.60 46.0 4.45e-01 100.0% 77.6%
5015298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.72e-01 100.0% 88.0%
3594652 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.59 47.0 3.03e-01 100.0% 22.9%
4963 4012.1.1.1 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C 0.59 45.0 4.53e-01 95.5% 100.0%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 47.0 4.12e-01 97.7% 66.7%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.59 47.0 3.34e-01 100.0% 67.9%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.58 45.0 4.08e-01 97.7% 100.0%
3388590 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.58 45.0 4.28e-01 95.5% 71.7%
3347090 221.1.1.159 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7138 0.58 49.0 4.06e-01 100.0% 83.5%
3486285 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 45.0 3.97e-01 97.7% 90.7%
4007969 1077.1.1.1 few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.56 42.0 3.67e-01 95.5% 52.9%
3221889 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.57e-01 95.5% 57.0%
3713327 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 2.92e-01 100.0% 20.5%
4018289 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 42.0 3.13e-01 95.5% 86.9%
4295284 1077.1.1.1 few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.55 42.0 3.74e-01 95.5% 96.0%
3954764 316.1.1.68 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF28438 0.55 42.0 3.74e-01 95.5% 96.0%
3601845 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 40.0 2.74e-01 95.5% 20.2%
3226828 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 43.0 3.28e-01 97.7% 44.8%
5001287 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 43.0 3.53e-01 100.0% 49.5%
3704667 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 40.0 2.48e-01 100.0% 18.2%