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ON968456.1__UXO94090.1__Pan5_48__00049

Bact-Vir

ON968456.1__UXO94090.1__Pan5_48__00049

Identity

Accession:
ON968456 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-84_124-149_208-217
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.80 52.0 6.25e-01 100.0% 94.9%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.72 34.0 3.87e-01 87.6% 58.1%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.66 43.0 4.61e-01 100.0% 76.0%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.65 38.0 4.67e-01 100.0% 98.5%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.62 48.0 5.12e-01 100.0% 92.0%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 40.0 3.96e-01 100.0% 64.1%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 39.0 4.28e-01 95.6% 78.7%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 38.0 4.00e-01 100.0% 71.6%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.58 52.0 5.27e-01 100.0% 93.8%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 38.0 4.14e-01 100.0% 80.6%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.58 40.0 3.46e-01 100.0% 45.7%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.58 39.0 4.09e-01 100.0% 75.2%
1v05A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 31.0 3.34e-01 97.3% 59.4%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 36.0 3.83e-01 100.0% 73.7%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.57 43.0 4.63e-01 100.0% 92.6%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 41.0 4.17e-01 100.0% 77.5%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 3.66e-01 85.8% 65.1%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.56 42.0 3.55e-01 99.1% 47.8%
1jsxA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 32.0 2.69e-01 99.1% 31.6%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.56 37.0 3.30e-01 100.0% 46.4%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.56 40.0 3.46e-01 100.0% 48.3%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.53 47.0 4.81e-01 100.0% 97.3%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.52 24.0 3.25e-01 88.5% 82.0%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.50e-01 96.5% 72.0%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.51 47.0 4.35e-01 100.0% 90.8%
3ofkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 34.0 2.74e-01 97.3% 37.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
373012 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.80 52.0 6.20e-01 100.0% 93.8%
4180783 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.77 53.0 5.89e-01 100.0% 87.8%
5020710 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.73 49.0 4.99e-01 100.0% 70.6%
4930489 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.73 49.0 4.98e-01 100.0% 70.6%
4995779 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 70.0 6.22e-01 100.0% 98.6%
4961856 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 46.0 4.26e-01 100.0% 52.9%
4951536 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.71 47.0 5.01e-01 100.0% 77.0%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 40.0 5.11e-01 95.6% 98.5%
4982501 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 40.0 4.32e-01 99.1% 67.4%
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.68 38.0 4.33e-01 99.1% 72.9%
3859218 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.68 39.0 3.86e-01 87.6% 53.3%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 35.0 3.97e-01 85.8% 64.8%
4938551 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 47.0 5.23e-01 98.2% 92.2%
3636050 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 38.0 3.78e-01 89.4% 54.8%
5083501 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 50.0 5.57e-01 100.0% 98.9%
5006048 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.66 55.0 5.60e-01 100.0% 88.2%
3964426 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 49.0 4.82e-01 100.0% 72.5%
4972120 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.65 56.0 5.75e-01 100.0% 92.7%
5069899 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.64 51.0 5.01e-01 100.0% 78.3%
3658804 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 43.0 4.36e-01 100.0% 67.8%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.64 45.0 5.07e-01 97.3% 96.5%
4982523 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.64 55.0 5.55e-01 100.0% 88.7%
3971942 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 45.0 3.74e-01 100.0% 43.1%
4939497 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.62 50.0 4.90e-01 100.0% 77.6%
4954540 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 54.0 5.55e-01 100.0% 93.6%
3968971 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.62 39.0 4.25e-01 99.1% 77.8%
5022429 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.62 54.0 5.22e-01 100.0% 82.4%
5023996 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.61 55.0 5.58e-01 100.0% 95.6%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.59 38.0 4.45e-01 100.0% 91.4%
4260084 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 37.0 3.69e-01 100.0% 60.0%
3817355 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.59 53.0 5.07e-01 100.0% 82.3%
3650734 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.59 43.0 3.95e-01 100.0% 59.3%
3304930 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.58 53.0 5.41e-01 100.0% 97.3%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.58 42.0 4.60e-01 100.0% 93.3%
4342567 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 39.0 3.90e-01 100.0% 67.0%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 40.0 4.57e-01 100.0% 95.3%
4313132 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 44.0 3.38e-01 100.0% 36.0%
4955649 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.57 32.0 3.66e-01 97.3% 75.0%
3974369 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 38.0 4.25e-01 100.0% 90.6%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.55 40.0 3.80e-01 100.0% 63.9%
4131458 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.54 39.0 3.12e-01 100.0% 37.0%
3936663 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 4.01e-01 99.1% 75.2%
3555476 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 37.0 2.90e-01 94.7% 33.2%
3353869 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 37.0 4.10e-01 96.5% 96.5%
3511358 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 40.0 4.28e-01 100.0% 95.0%
4462724 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 43.0 3.47e-01 94.7% 68.1%
5055166 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.50 28.0 3.28e-01 96.5% 82.9%
D2 medium residues 150-207
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c8zA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 46.0 2.99e-01 94.8% 45.6%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.52 39.0 3.48e-01 87.9% 88.5%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 30.0 3.03e-01 89.7% 56.1%
2mcqA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 33.0 3.06e-01 98.3% 48.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.31e-01 70.7% 65.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3490047 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 49.0 4.84e-01 79.3% 75.0%
3425722 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.66 52.0 4.61e-01 87.9% 95.3%
3475436 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.63 50.0 4.71e-01 86.2% 85.7%
3432156 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.61 46.0 4.70e-01 82.8% 98.2%
3246854 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 46.0 4.47e-01 84.5% 90.8%
4619258 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 44.0 3.64e-01 81.0% 54.9%
4011423 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 48.0 4.45e-01 89.7% 84.0%
3460948 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 46.0 4.07e-01 87.9% 100.0%
4517870 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 45.0 3.95e-01 87.9% 67.4%
3561937 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.59 45.0 3.07e-01 87.9% 26.9%
3801400 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 2.57e-01 72.4% 16.6%
3889228 386.1.1.66 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.56 44.0 4.06e-01 87.9% 80.8%
3595091 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.56 47.0 3.40e-01 98.3% 63.2%
3295810 386.1.1.249 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF25908 0.56 43.0 3.83e-01 84.5% 72.9%
4152393 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.55 43.0 3.65e-01 89.7% 100.0%
3509371 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 45.0 3.77e-01 100.0% 88.7%
3656728 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.54 39.0 3.95e-01 79.3% 91.5%
4018549 5089.1.1.6 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF_SNTX 0.54 39.0 2.64e-01 84.5% 71.1%
3265175 109.1.1.1 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.53 44.0 3.29e-01 98.3% 58.8%
5052405 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 36.0 3.27e-01 72.4% 69.7%
3418511 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.53 38.0 4.01e-01 79.3% 98.0%
3265424 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 40.0 3.80e-01 87.9% 97.3%
3733421 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 41.0 3.01e-01 96.6% 80.0%
3370517 109.1.1.6 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.52 43.0 3.27e-01 96.6% 45.0%
3214114 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 2.58e-01 100.0% 22.0%
4968450 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.49e-01 98.3% 72.7%
3723426 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.51 39.0 2.63e-01 87.9% 86.8%
3659060 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.51 44.0 3.52e-01 100.0% 85.0%