←Back to structures

ON968456.1__UXO94096.1__Pan5_54__00055

Bact-Vir

ON968456.1__UXO94096.1__Pan5_54__00055

Identity

Accession:
ON968456 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudanabaena_phage_Pan5

TaxID: 2981588

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lugB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.65 45.0 3.48e-01 73.1% 35.8%
5g4iA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.63 51.0 3.56e-01 88.5% 40.8%
2nx8A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 49.0 3.89e-01 92.3% 40.5%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 51.0 4.11e-01 93.6% 65.6%
5yuyA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.61 49.0 4.25e-01 88.5% 83.6%
2xwxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 3.83e-01 73.1% 75.0%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 49.0 4.02e-01 93.6% 62.2%
4zi3D00 1.20.1520.10 Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain 0.59 41.0 3.47e-01 71.8% 74.2%
4tqrA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 48.0 4.50e-01 91.0% 95.9%
1tiyA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 50.0 4.09e-01 98.7% 84.0%
4fd7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 48.0 3.54e-01 96.2% 78.9%
3pm9A03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.55e-01 76.9% 81.0%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.81e-01 97.4% 64.2%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 43.0 3.17e-01 88.5% 56.2%
6h4lA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.58e-01 96.2% 60.4%
1u2hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.61e-01 96.2% 61.5%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 39.0 3.86e-01 78.2% 97.6%
1fhgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.50e-01 96.2% 57.8%
3u02A01 3.30.70.2200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.64e-01 93.6% 86.8%
2r7rA07 3.30.230.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 37.0 3.18e-01 73.1% 75.0%
3b43A06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.55e-01 96.2% 62.1%
2kdgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.47e-01 96.2% 59.0%
2dm2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.40e-01 96.2% 54.5%
3lcyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.49e-01 96.2% 60.8%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.52 36.0 3.45e-01 73.1% 62.0%
8ediA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.37e-01 96.2% 60.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3182759 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 55.0 4.12e-01 89.7% 40.0%
4561918 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.66 47.0 4.20e-01 74.4% 99.1%
4011724 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 53.0 4.03e-01 89.7% 44.7%
3334323 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.64 51.0 4.04e-01 92.3% 41.2%
4961537 2492.1.1.17 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.64 50.0 4.18e-01 92.3% 46.9%
5083543 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.64 50.0 4.08e-01 92.3% 43.9%
3971491 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.64 50.0 4.29e-01 92.3% 52.3%
3326134 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.62 49.0 3.87e-01 92.3% 40.0%
4588120 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 45.0 4.06e-01 76.9% 98.2%
4409101 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.62 48.0 3.93e-01 92.3% 42.5%
165278 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.62 49.0 3.89e-01 92.3% 40.5%
3326089 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.62 49.0 4.43e-01 93.6% 62.7%
5058066 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.61 52.0 4.66e-01 98.7% 66.1%
2643961 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.61 48.0 4.02e-01 92.3% 47.9%
3208793 213.1.1.61 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › GNAT_LYC1-like 0.61 50.0 3.87e-01 92.3% 44.3%
3955731 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.60 44.0 3.93e-01 79.5% 88.7%
3958063 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 48.0 4.56e-01 92.3% 77.9%
3945344 2492.1.1.17 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam 0.59 49.0 3.97e-01 94.9% 61.3%
3721780 608.1.1.0 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.58 48.0 4.60e-01 89.7% 94.4%
5024216 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 52.0 4.01e-01 100.0% 69.7%
4011731 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 37.0 2.75e-01 71.8% 24.7%
3782090 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.53 43.0 3.64e-01 89.7% 74.8%
2833278 302.3.1.1 ↗ a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein › LMWSLP_N 0.53 36.0 3.46e-01 75.6% 58.2%
3713550 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 44.0 3.74e-01 97.4% 93.1%
5025566 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.50 34.0 3.85e-01 70.5% 100.0%