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ON970617.1__UVK63642.1__SEA_DOXI13_53__00053

Bact-Vir

ON970617.1__UVK63642.1__SEA_DOXI13_53__00053

Identity

Accession:
ON970617 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Scapunavirus› Streptomyces_phage_Doxi13

TaxID: 2965224

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.66 55.0 5.16e-01 100.0% 83.6%
5vmzA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 48.0 5.13e-01 79.2% 95.0%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.59 42.0 3.52e-01 81.2% 82.3%
4ak8A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 42.0 3.28e-01 91.7% 73.8%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 44.0 2.74e-01 95.8% 24.8%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.52 39.0 3.09e-01 85.4% 50.8%
1nktA02 3.90.1440.10 Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain 0.51 35.0 2.81e-01 77.1% 83.6%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 2.94e-01 97.9% 84.0%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.50 40.0 2.79e-01 91.7% 61.5%
2mlkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.09e-01 89.6% 58.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3303628 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.71 62.0 6.17e-01 100.0% 98.0%
4028910 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.71 60.0 5.49e-01 100.0% 75.4%
3295690 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.69 58.0 5.33e-01 100.0% 80.0%
4024679 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.67 55.0 5.27e-01 100.0% 91.7%
3787008 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.67 55.0 5.16e-01 100.0% 76.6%
3323677 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.67 56.0 5.28e-01 100.0% 85.0%
3353030 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.66 55.0 4.47e-01 100.0% 52.0%
3323055 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.65 54.0 5.02e-01 100.0% 80.0%
3308182 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.65 53.0 4.50e-01 100.0% 57.8%
3581478 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 44.0 4.12e-01 81.2% 60.0%
3911109 386.1.1.290 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C 0.62 49.0 4.11e-01 89.6% 51.8%
3536995 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 48.0 4.46e-01 85.4% 73.3%
3914802 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 48.0 4.43e-01 89.6% 69.2%
4956911 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.59 47.0 3.16e-01 91.7% 62.9%
3577690 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 49.0 4.29e-01 100.0% 88.0%
3287377 1185.1.1.0 ↗ a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae 0.57 46.0 3.65e-01 100.0% 80.8%
4944478 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.57 46.0 3.60e-01 100.0% 54.2%
3088263 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.56 44.0 2.78e-01 95.8% 30.5%
3435437 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 42.0 3.47e-01 87.5% 82.1%
4027404 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.53 36.0 3.01e-01 72.9% 36.8%
3699640 3142.1.1.0 ↗ alpha arrays › a domain of protein A6KY75 › a domain of protein A6KY75 › a domain of protein A6KY75 0.53 36.0 2.51e-01 70.8% 19.1%
3717089 3142.1.1.0 ↗ alpha arrays › a domain of protein A6KY75 › a domain of protein A6KY75 › a domain of protein A6KY75 0.53 36.0 3.15e-01 70.8% 45.0%
5058372 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.52 42.0 2.96e-01 100.0% 46.7%
3493502 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 2.55e-01 93.8% 23.9%
3267900 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.50 37.0 3.37e-01 79.2% 87.7%